PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0050659.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

SAP

Protein Properties

Length: 337aa MW: 36410.6 Da PI: 6.9849

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0050659.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	518.9	2.3e-158	2	336	128	455
SAP 128 rrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdih 221 ++ys+v++ f+p+ + d++++al+Cr+l+lsd++la+Gf+dG+vrlfdl+t++hvstf++++++++G+fsr+vsGivis s+l+fa+ldGdi+ Lj0g3v0050659.1 2 GNYSLVVPPFSPP-LAGDHHPQALICRYLTLSDNHLACGFIDGTVRLFDLQTQAHVSTFWSNQGHLFGPFSRSVSGIVISGSALTFARLDGDIY 94 689999***98.8999************************************************************************ PP SAP 222 vavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteret 315 vavid++g +arral Gdvvn+G+lv+f+GsgrW+vGl+aG++G+af+iWda+te++vfvGGsltdPe+v GWhmltel+e vGr+rvtere+ Lj0g3v0050659.1 95 VAVIDVPG--PARRALPGDVVNNGVLVEFVGSGRWCVGLFAGHAGAAFQIWDAHTEQRVFVGGSLTDPETVLGWHMLTELVEPVGRLRVTEREV 186 **55..9******************************************************************************* PP SAP 316 avaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg..aqrgvlgCvnggyalvyagg..v 405 +vaCt +rlv+f++rn++v+lr++ +r+G++v+sld+s+e++vvv+++G++tvrrv n+e+v+rfr+++ + rg+lgC+n+gy+++y+gg + Lj0g3v0050659.1 187 VVACTGSRLVCFNVRNPEVLLRDVGSRAGFVVGSLDVSHEGFVVVERNGMGTVRRVGNFERVSRFRLSStsWLRGLLGCMNLGYVVTYSGGsgL 280 ***************************************************************9999***************9889 PP SAP 406 lrvWeiekkeg.ylyslrervg.....evnalvaddrhvavsssdgtihlldfgaq 455 lrvW++++ +g +++++++r g ++n++va+++hvavs++dg ihlldf++q Lj0g3v0050659.1 281 LRVWDTHHPVGrLCVEVAVRPGeaaqgYANSMVASQTHVAVSFNDGLIHLLDFSVQ 336 *****999****998888899***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.130.10.10	4.4E-7	32	82	IPR015943	WD40/YVTN repeat-like-containing domain
SuperFamily	SSF69322	1.12E-12	33	334	No hit	No description
Gene3D	G3DSA:2.130.10.10	4.4E-7	128	227	IPR015943	WD40/YVTN repeat-like-containing domain
Gene3D	G3DSA:2.130.10.10	4.4E-7	269	286	IPR015943	WD40/YVTN repeat-like-containing domain
Gene3D	G3DSA:2.130.10.10	2.2E-4	303	332	IPR015943	WD40/YVTN repeat-like-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGNYSLVVPP FSPPLAGDHH PQALICRYLT LSDNHLACGF IDGTVRLFDL QTQAHVSTFW 60 SNQGHLFGPF SRSVSGIVIS GSALTFARLD GDIYVAVIDV PGPARRALPG DVVNNGVLVE 120 FVGSGRWCVG LFAGHAGAAF QIWDAHTEQR VFVGGSLTDP ETVLGWHMLT ELVEPVGRLR 180 VTEREVVVAC TGSRLVCFNV RNPEVLLRDV GSRAGFVVGS LDVSHEGFVV VERNGMGTVR 240 RVGNFERVSR FRLSSTSWLR GLLGCMNLGY VVTYSGGSGL LRVWDTHHPV GRLCVEVAVR 300 PGEAAQGYAN SMVASQTHVA VSFNDGLIHL LDFSVQL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0050659.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP008952	0.0	AP008952.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT45D07, TM0932b, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003617930.1	1e-173	transcriptional regulator STERILE APETALA
TrEMBL	A0A2Z6PF57	1e-178	A0A2Z6PF57_TRISU; Uncharacterized protein
STRING	AET00889	1e-173	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7687	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	3e-76	SAP family protein