PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0034169.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 349aa    MW: 38877.6 Da    PI: 5.861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0034169.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-12175222355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r h  +Er+RR+++ ++f  L  +lP +     kK++Ka++Le A+ Y+k+L+
  Lj0g3v0034169.1 175 RDHVLAERKRREKLSQRFIALSAVLPGL-----KKMDKATVLEDAISYLKQLK 222
                      56999***********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.758172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-16176234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9176221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-13177226No hitNo description
SuperFamilySSF474591.7E-16177239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-15178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMQISSTNYL PELGMEEPTY FHQFPMDSSY AEFQDLEFES FTASPDESYS SGNKRFNSES  60
PDYSFAPARP TKQPKTETTW SAYGTDLIAS KASSSSSSPK IISFEHSNVS SVTSSQPFHN  120
MGAANVVKPK MESGFGENLD FAAVISQGAY DDKSFLYNEN KLAATATIRN QVQARDHVLA  180
ERKRREKLSQ RFIALSAVLP GLKKMDKATV LEDAISYLKQ LKEQVKTLEE QVADKTVETA  240
IFLKRSVVFG DDDGSFSDEN SDQSLPEIEA RVSGKDILIR IHCEKHHGKA VSAILVELEK  300
HHLTVQSTSI LPFGNNTLDI TIVTQMKKEY NLTTKELIKS LSQSLKQCA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185ERKRRE
2181186RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0034169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229616.11e-153transcription factor bHLH19
RefseqXP_027346371.11e-153transcription factor bHLH18-like
TrEMBLA0A0B2SRQ21e-145A0A0B2SRQ2_GLYSO; Transcription factor bHLH25
TrEMBLK7KPK51e-145K7KPK5_SOYBN; Uncharacterized protein
STRINGGLYMA05G23291.11e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-55bHLH family protein