PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0004489.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 307aa    MW: 32649 Da    PI: 10.2389
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0004489.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.82.8e-36441443102
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                       k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++ti WLl+ a+pai+++tgt++ +a ++  +++ +  + ++ss++++++ +
  Lj0g3v0004489.1  44 QKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHRSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVNGTLRIPTTSPSSNSKSPDPE 137
                      6899***********************************************************8888855542223333222233332222222 PP

              TCP  96 kskksqk 102
                      ++ +++k
  Lj0g3v0004489.1 138 PGDPNEK 144
                      2222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3048136IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00149103IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAMEASRNID LRLGEPKEEP GTEEVAAEMS MSMSMQVNKA QTPQKRASTK DRHTKVEGRG  60
RRIRMPATCA ARIFQLTREL GHRSDGETIR WLLEHAEPAI IAATGTGTVP AIAMSVNGTL  120
RIPTTSPSSN SKSPDPEPGD PNEKKKRKRP GTGAADVSFG DGGGVSVSVS AGLTTSNPNP  180
TIPQQTVIPL PQNVVPVWAI PSNAVVPAGG AFFVVPPMAT AAPSNSNLQP QFFTIARPIS  240
AFVSSMVTPV QFQPASSSCS AAPPSRATVM APSTTTTTTT THTLRDFSLE IYDRQELQFM  300
SRSSSKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142149EKKKRKRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.31170.0pod| protoplast| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00638PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0004489.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510891.11e-133transcription factor TCP9
SwissprotO646473e-77TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A1S2YW731e-131A0A1S2YW73_CICAR; transcription factor TCP9
STRINGXP_004510891.11e-132(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-59TCP family protein