PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G16500.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 372aa    MW: 41595.3 Da    PI: 7.8833
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G16500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.51.9e-47371832128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                       pGfrFhPtd+elv +yL++kve+k++++ e+ike+diyk++PwdLpk            +++++++ +yfF+ r +ky+++ r+nr+t sg+W
  LPERR12G16500.1  37 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-EIIKEIDIYKHDPWDLPKashggvqmlqgsSATEKDECCYFFCLRGRKYRNSIRPNRVTGSGFW 129
                      69***************************.89***************6689999877664333345566************************* PP

              NAM  84 katgkdkevlskkgel.........vglkktLvfykgrapkgektdWvmheyrl 128
                      katg dk+++s++++          +glkk+Lv+y+g+a +g+ktdW+mhe+rl
  LPERR12G16500.1 130 KATGIDKPIYSNNNSSsaiagagncIGLKKSLVYYRGSAGRGTKTDWMMHEFRL 183
                      ***********83333556666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100547.79236220IPR003441NAC domain
SuperFamilySSF1019418.11E-4836219IPR003441NAC domain
PfamPF023652.6E-2338183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEEKMLERIK ESGSPSPGGA AGILEDTGTD HDDDLVFPGF RFHPTDQELV GFYLTRKVEK  60
KPFSIEIIKE IDIYKHDPWD LPKASHGGVQ MLQGSSATEK DECCYFFCLR GRKYRNSIRP  120
NRVTGSGFWK ATGIDKPIYS NNNSSSAIAG AGNCIGLKKS LVYYRGSAGR GTKTDWMMHE  180
FRLPSSSSPS PADYDFSTAS LPNANLQDAE IWTICRIFKR RMTYTKGRAS INNTMINKRS  240
HQLQLQQIQQ QQQQQYYYHD HQYRRHYTSM ASDAETTMTT MSQSQSHTVV TDEFRHRQTS  300
SQFILDFQAG MTSSSSSTVT AGVVQPPAAA TATGWGGEQV NFRDGGGSSS GSSWDELGRI  360
MEMSTNSANC YM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-423822617174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G16500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126207e-63CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664770.11e-131PREDICTED: protein FEZ-like
SwissprotQ9SK557e-74NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0D9Y1Q30.0A0A0D9Y1Q3_9ORYZ; Uncharacterized protein
STRINGLPERR12G16500.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-65NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]