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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR12G16270.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
YABBY |
| Protein Properties |
Length: 195aa MW: 21417.1 Da PI: 8.4011 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR12G16270.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 157.8 | 9.3e-49 | 6 | 166 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98
+ +e+vCyv+CnfCntilavsvP +s++++vtvrCGhCt+llsvnl+ +q a + ++ +++l+e + ++ + + e sa +s s+
LPERR12G16270.1 6 TPAEHVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMQHSAPAPQ--DHHHHHLQESMSGCFRDQSGYPEFGLSAASSSSK 97
5789******************************************988755443332..2233333333333333333333333333333333 PP
YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+l+ + + + ++ e+ r eei+rika+nPdishreafs+aaknWah+P+ihfgl
LPERR12G16270.1 98 LRLQPPSAAAMVSYSQQNQQLEQALHL---QRRGNGEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 166
344444444444444445555544433...345567**********************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 195 aa
Download sequence Send
to blast |
MSAQITPAEH VCYVHCNFCN TILAVSVPGN SMLNIVTVRC GHCTNLLSVN LRGLMQHSAP 60
APQDHHHHHL QESMSGCFRD QSGYPEFGLS AASSSSKLRL QPPSAAAMVS YSQQNQQLEQ 120
ALHLQRRGNG EEIRRIKANN PDISHREAFS TAAKNWAHYP NIHFGLSPAH EGGKKLVEVD 180
AIPTPSSKKI QGFYS
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB274018 | 1e-145 | AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds. |
| GenBank | AK070737 | 1e-145 | AK070737.1 Oryza sativa Japonica Group cDNA clone:J023061C09, full insert sequence. |
| GenBank | AK104918 | 1e-145 | AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence. |
| GenBank | CT829139 | 1e-145 | CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence. |
| GenBank | FJ940195 | 1e-145 | FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds. |
