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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR12G15920.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
TCP |
| Protein Properties |
Length: 302aa MW: 31257.8 Da PI: 8.4861 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR12G15920.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 106.3 | 4.7e-33 | 50 | 193 | 1 | 121 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssa 70
aag+kdrhsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+i+WL+++a ai+ l+++ +++
LPERR12G15920.1 50 AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIDWLIRAAASAIDSLPSLdcssfllpsppiptpatatadadgDNDVT 143
6899********************************************************************9999877655444322211111 PP
TCP 71 seceaesssssasnsssg.......kaaksaakskksqksaasalnlak.esrakarar 121
se++++ss + + +++ +++q+++a++ +a+ + a a a
LPERR12G15920.1 144 SETSKSSS---------VlslaagnGNGNGNENVEQQQQQQATMAYYAAaAHMAAAPAM 193
22233333.........133433332223333333344444434444442444444444 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MEEFAVAGNN NGSNNKKRPR GALAAVAGNN GASSPATAAA WRTSRVARAA AGGKDRHSKV 60
VTSRGLRDRR VRLSVPTAIA FYDIQDRLGV DQPSKAIDWL IRAAASAIDS LPSLDCSSFL 120
LPSPPIPTPA TATADADGDN DVTSETSKSS SVLSLAAGNG NGNGNENVEQ QQQQQATMAY 180
YAAAAHMAAA PAMAFEMAPA MPHHHLAFSQ ELNATVAFER GTLQSNAVAA ASLWPPPAAA 240
SQHQQYPFLL QRFAAAPSEV AGLPFFLAGG GGGGGGAAGA PVAANVGERR LQLWDFKEER 300
KS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP014968 | 8e-90 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | BX000457 | 8e-90 | BX000457.2 Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
