PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G15670.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 856aa    MW: 93362.2 Da    PI: 6.2997
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G15670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-182885457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  LPERR12G15670.1 28 YVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85
                     6789****************************************************97 PP
2START170.88.9e-541783852204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ ++++ vi +g  g+++l
  LPERR12G15670.1 178 IAEETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDIIHVIPTGngGTIEL 270
                      68999*****************************************************.8888888888************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      ++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s + +v+hvdl++++++++lr+
  LPERR12G15670.1 271 IYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRP 364
                      ***********999****************************9999999********************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s  + ++k++ a+l++ +
  LPERR12G15670.1 365 LYESPKILAQKMTIAALRHIR 385
                      ****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4022286IPR001356Homeobox domain
SMARTSM003894.0E-152490IPR001356Homeobox domain
CDDcd000864.13E-162787No hitNo description
SuperFamilySSF466891.41E-162789IPR009057Homeodomain-like
PfamPF000466.5E-162885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-182985IPR009057Homeodomain-like
CDDcd146868.33E-679118No hitNo description
PROSITE profilePS5084827.005168368IPR002913START domain
CDDcd088752.10E-68172388No hitNo description
Gene3DG3DSA:3.30.530.204.4E-24176368IPR023393START-like domain
SMARTSM002346.6E-45177387IPR002913START domain
PfamPF018521.1E-51178385IPR002913START domain
SuperFamilySSF559612.06E-38178388No hitNo description
SuperFamilySSF559613.02E-5425509No hitNo description
SuperFamilySSF559613.02E-5539612No hitNo description
PfamPF086706.7E-47713855IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MAGGRERLSS SSLSPTAAGA PQVDTGKYVR YTPEQVEALE RVYTECPKPS SLRRQQLIRE  60
CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQTVNRKLN AMNKLLMEEN DRLQKQVSRL  120
VYENGYMRSV QTQLHNPSAA TTDTSCESVV TSGQHQQQNP AVLHPQRDAN NPAGLLAIAE  180
ETLAEFMSKA TGTAVEWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI  240
LKDRPSWYRD CRCVDIIHVI PTGNGGTIEL IYMQTYAPTT LAAPRDFWTL RYTSGLEDGS  300
LVICERSLTQ STGGPSGPNT PNFIRAEVLP SGYLIRPCEG GGSMIYIVDH VDLDAWSVPE  360
VLRPLYESPK ILAQKMTIAA LRHIRQIAHE SSGEIPYGAG RQPAVFRTFS QRLSRGFNDA  420
VSGFPDDGWS LLSSDGSEDI TISVNSSPNK IVGSHVSPNP LFSNVGGGIL CAKASMLLQN  480
VPPALLVRFL REHRSEWADP GVDAYSAASL RANPYAVPGL RTSGFMGSQV ILPLAHTLEH  540
EEFLEVIRLE GHGFSHDEVL LSRDMYLLQL CCGVDENATS ASAQLVFAPI DESFADDAPL  600
LPSGFRVIPL DTKTDVPSAT RTLDLASALE VGPGGASRAS TDASGACNTR SVLTIAFQFS  660
YENHLRESVA AMARSYVRAV MASVQRVAVA IAPSRLGPQI GMKHPPASPE AITLASWIGR  720
SYRAHTGADI RWSDTEDADS PLALLWKHSD AILCCSLKPA PMFTFANNAG LDILETTLVN  780
LQDISLEMIL DDEGRKALCS EFPKIMQQGF TYLPGGVCKS SMGRQASYEQ AVAWKVLSDD  840
DTPHCLAFML VNWTFM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G15670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3687120.0EU368712.1 Oryza sativa Indica Group SKIP interacting protein 22 (SIP22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620816.10.0homeobox-leucine zipper protein HOX33
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A0D9Y1D30.0A0A0D9Y1D3_9ORYZ; Uncharacterized protein
STRINGLPERR12G15670.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]