PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G15270.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CPP
Protein Properties Length: 457aa    MW: 50627.1 Da    PI: 7.2051
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G15270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.61.2e-13150187340
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+C+CkkskClk+YC Cfa+g++Cse+C C  C Nk+
  LPERR12G15270.1 150 CKSCSCKKSKCLKLYCVCFASGSHCSESCGCYPCYNKS 187
                      799*********************************97 PP
2TCR46.38.5e-15226261439
              TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN 
  LPERR12G15270.1 226 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 261
                      79*********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-9148189IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163428.74149263IPR005172CRC domain
PfamPF036382.9E-9151186IPR005172CRC domain
SMARTSM011141.2E-13223264IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.5E-11226260IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MASSGDPSGV VVPRNFRLLE ELERGEKGIG DGSVSYGMDD ADDIYMRAES QTTTTITKGE  60
RTEAASEPFL RRRKSTSRSR RRPRFRPASA SPVMASSGDP SRVVVPRNFR LLEELERGEK  120
GIGDGSVSYG MDDADDIYMR RKADEGEGGC KSCSCKKSKC LKLYCVCFAS GSHCSESCGC  180
YPCYNKSIHG VPRSAPALPL KAVQTSEAGH DSLEQIIRSP MDLVRRKCTC KKSGCLKKYC  240
DCYQGGAGCS INCKCDDCKN PYGRKVGVIL DGKNILAGPT PNERNGTEAD SSDDEEDDYY  300
MNRPLSPVSP SPVSRESSFQ QETLVGVEVQ TMNGHLYPKP ITQVRPDSWQ ITRRPTDEVR  360
GEAWGYLRRP SEDGTSDVME GHADPKFPRD NKLPDNHVDR YSIPRCIEVM NGMADLSPIE  420
KSLAPDVFLD PSNREIFLSL TVDIRTMWLK RKMSSLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17181RRKSTSRSRRR
27986RRRPRFRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G15270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086640.0AK108664.1 Oryza sativa Japonica Group cDNA clone:002-148-G02, full insert sequence.
GenBankCU4067180.0CU406718.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618281.10.0protein lin-54
TrEMBLA0A0D9Y1840.0A0A0D9Y184_9ORYZ; Uncharacterized protein
STRINGLPERR12G15270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-24TESMIN/TSO1-like CXC 2