PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G15000.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 332aa    MW: 35835.2 Da    PI: 8.4158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G15000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09166225455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...........TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkas........kapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i +++ +L++l+P +         + +    + a++L ++++Y+ksLq
  LPERR12G15000.1 166 AHNLTEKRRRLKITERLRTLKRLVPGCDkshiltllGRHIFQTDHASTLDQTIQYMKSLQ 225
                      8*************************5559****955555559****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.996162224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-13162233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-7166225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13166229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-11166228No hitNo description
SMARTSM003532.0E-10168230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MNGQDSAAAG LFTGDDSGKS TAAAENEDFS DMLRDFDYSN SKDLFELMWQ SGANFDQPPA  60
VSYRSQSPSL PPPETTVMDD QIIAAPSEEE MAAWLYPIVS GDDRQLENVD GWRAAPPEKK  120
STEIERPNAA LTTINKDTSN DDSGDRKKQA SSSGGAKTRS PHAAGAHNLT EKRRRLKITE  180
RLRTLKRLVP GCDKSHILTL LGRHIFQTDH ASTLDQTIQY MKSLQQQVNT MSFIGSPPPP  240
PPAAIYPAAV HPRYITPPIV LADGPPPRSP AMVPFAGAML PYPPYPAAVL LPPPPMYRPA  300
ATAAPAAHRH GSGRSGRISK SSTSSSSLGK KQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171175KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G15000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.13e-44transcription factor APG
TrEMBLA0A0D9Y1530.0A0A0D9Y153_9ORYZ; Uncharacterized protein
STRINGLPERR12G15000.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-16phytochrome interacting factor 3