PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G14990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 163aa MW: 18811.3 Da PI: 9.6696 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.1 | 1.2e-16 | 93 | 140 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn E+rRR riN+++ +L++l+P + K + a++L k+++Y+ksLq LPERR12G14990.1 93 ETHNLTEKRRRCRINEKLKTLQQLVPGC-----DKSNQASTLDKTIRYMKSLQ 140 69*************************9.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-18 | 88 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.736 | 90 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-14 | 93 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.11E-15 | 93 | 144 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.9E-18 | 93 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-15 | 96 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MSAWIYPIAP GDELTAVDRQ MLVASGEEHG VKVYDQAPAP AKDGGDQRWL TPEIRMEKVH 60 THLEGICVPE TRCISNHERR KTSRARRSSR YSETHNLTEK RRRCRINEKL KTLQQLVPGC 120 DKSNQASTLD KTIRYMKSLQ QHLQVDRFSH ISAHSSYFYI GFT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G14990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806979.1 | 8e-25 | putative transcription factor bHLH056 | ||||
TrEMBL | A0A0D9Y152 | 1e-120 | A0A0D9Y152_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G14990.1 | 1e-121 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16434 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28800.1 | 3e-17 | bHLH family protein |