PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14970.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 399aa    MW: 42574.3 Da    PI: 10.6153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31333390359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  LPERR12G14970.1 333 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 390
                      9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-18284329IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.6E-34319390IPR003657WRKY domain
PROSITE profilePS5081130.148326389IPR003657WRKY domain
SuperFamilySSF1182906.15E-27329390IPR003657WRKY domain
SMARTSM007744.4E-38331391IPR003657WRKY domain
PfamPF031065.8E-27333389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMSRSPAEAI VQSCKPRRGN FLVWLSSPAA MMEEEVEAAN RAAVESCHRV LALLSQQQDP  60
ALLRSIASET GEACAKFRKV VSLLGNGGGG SGSRGGGAGH ARGRMAGGRS KPAAVLREKG  120
FLDSSSSSSG GAHQLGMMMM SNAATPSTSS AHLRNRIGGG GGLPDSTRGL DLVSSSSKGG  180
HHQFEPPKMV QPLSVQFQFG ATAHRYPFQQ HQQQKLQAEM FKRSNSGISL KFDSPSATGT  240
TMSSAFMSSL SMDGSVASLE GKPPFHLIGG PVASDPVNAH HAPKRRCTGR GEDGSGKCAT  300
TGRCHCSKRR KLRIKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV  360
RGCPARKHVE RCVDDPAMLI VTYEGEHNHT RLPTQSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20319393275WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706480.0AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664169.10.0PREDICTED: protein WRKY1
TrEMBLA0A0D9Y1500.0A0A0D9Y150_9ORYZ; Uncharacterized protein
STRINGLPERR12G14970.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-71WRKY DNA-binding protein 21