PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR12G14640.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 761aa MW: 86994.4 Da PI: 7.2913 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.6 | 5.9e-15 | 68 | 150 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk+l s+ +++p k ae+ +g+ ++ l+ +sg++W v + +k ++ +l +GW++F+ka++L+e+D + F+ +g+s++ LPERR12G14640.2 68 FFKIL---TEDCSHGISIPEKVAERLSGEITK--GFNLKAPSGKTWCVGI--EKVADELLLMSGWEDFAKAHELQENDLLFFSCKGNSNG 150 66666...33445669**********777555..59999***********..*******************************9988776 PP | |||||||
2 | B3 | 43.6 | 5.4e-14 | 300 | 397 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 f++vl++++ ++++lv+p fa+eh + +s +++l + ++W vk+ + ++ ++++ W +F ++n+L++g +++F+l++ ++ ++ LPERR12G14640.2 300 FVTVLKTANIRRKSLLVVPSGFADEHLDS--RSHEIVLIIpNKKEKWYVKYYHGNNTRGFICH-RWFKFIRENRLQDGYICIFELMKGaKRVTM 390 8899999999****************434..34456665527779******666666666555.9*******************9987799999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+ k LPERR12G14640.2 391 TVHVIGK 397 9999865 PP | |||||||
3 | B3 | 47.2 | 4e-15 | 451 | 532 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +r+++p kfa++++g+ ++ l+ sg +W v + +k ++++l +GW++F+ka++Lke+D + F+ +g+ + ++ v +f++ LPERR12G14640.2 451 HRVSIPEKFAKNFNGQIIKG--FNLKAFSGGTWHVDV--EKVADEMFLVSGWEDFAKAHELKENDLLFFTCNGKGSCSFDVLIFDA 532 789*******9887775554..9999***********..*******************************8877555578888876 PP | |||||||
4 | B3 | 48 | 2.3e-15 | 655 | 752 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 f++vl + +v+++++l++p fa++h +s +++l + ++W k+ + ++ +++ + GW +F n+L+eg +++F+l++ ++ ++ LPERR12G14640.2 655 FVTVLRTGHVHRKNILIVPAGFAANHLDR--KSHEIMLVRpNRKEKWYAKYYHANNTRGF-SGYGWIKFICKNKLQEGYVCIFELMKGaKRPTM 745 8899999****************999444..45578887736669******767777675.677********************9987799999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v++k LPERR12G14640.2 746 TVHVISK 752 9999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.04E-17 | 61 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.66 | 65 | 162 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.41E-13 | 67 | 160 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-18 | 67 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.7E-12 | 68 | 150 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-8 | 68 | 162 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-17 | 293 | 396 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-17 | 294 | 396 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.52E-14 | 298 | 395 | No hit | No description |
Pfam | PF02362 | 3.0E-12 | 300 | 396 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.8E-9 | 300 | 398 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.351 | 300 | 398 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.79E-18 | 435 | 535 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.421 | 438 | 533 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-18 | 439 | 535 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.89E-15 | 440 | 531 | No hit | No description |
SMART | SM01019 | 4.0E-6 | 441 | 533 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-12 | 451 | 532 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-19 | 647 | 750 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-19 | 648 | 750 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.37E-15 | 653 | 748 | No hit | No description |
PROSITE profile | PS50863 | 12.21 | 655 | 753 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-13 | 655 | 752 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-13 | 655 | 753 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 761 aa Download sequence Send to blast |
MLSAKGKSSH SLFDPLTVLT ANFTRDQDYG NSILKKHAKV MAEKGCESCS RWQEHFYREH 60 MDVSRIRFFK ILTEDCSHGI SIPEKVAERL SGEITKGFNL KAPSGKTWCV GIEKVADELL 120 LMSGWEDFAK AHELQENDLL FFSCKGNSNG ICSFDVLIFD ASGCEKLSCF FISKKYSYIC 180 KHFNNTDSQN AEQYLSSDCE DTNTPPYLLG SPHKDSTSKK LSGKTKTNPS TSTGKEPEDP 240 NSSRCHVKHE MIEEEESDDD EHTDDEHDDY SYSRFASYLN SKERKQIFSL VSLQPGNPVF 300 VTVLKTANIR RKSLLVVPSG FADEHLDSRS HEIVLIIPNK KEKWYVKYYH GNNTRGFICH 360 RWFKFIRENR LQDGYICIFE LMKGAKRVTM TVHVIGKVDN RNVCGALYDA GEVMADKGCE 420 SCSKWQEHYY REHTDGSRIC FFRLMTGDFA HRVSIPEKFA KNFNGQIIKG FNLKAFSGGT 480 WHVDVEKVAD EMFLVSGWED FAKAHELKEN DLLFFTCNGK GSCSFDVLIF DASGCEKMPD 540 FFTSKKYNYM CKHFNNISGQ NVEHCLLSDS DDTSTPSYMA GSHKAATSKK VNGKTKISPS 600 KEPENVKQEM IEEEESDGDD EHVDYYYSRF ANYLTSEERE EIFSLTSLQP GNPVFVTVLR 660 TGHVHRKNIL IVPAGFAANH LDRKSHEIML VRPNRKEKWY AKYYHANNTR GFSGYGWIKF 720 ICKNKLQEGY VCIFELMKGA KRPTMTVHVI SKINNRFVLL G |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR12G14640.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878095.1 | 0.0 | B3 domain-containing protein Os12g0592300 isoform X1 | ||||
Swissprot | Q2QMT2 | 0.0 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A0D9Y112 | 0.0 | A0A0D9Y112_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G14640.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-25 | B3 family protein |