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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G14340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 377aa MW: 39970.4 Da PI: 4.7221 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+tae+Aa+a+++a+ l+g LPERR12G14340.1 39 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEDAARAYDEAACLLRG 88 789******.7*********33....35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.69E-29 | 38 | 95 | No hit | No description |
PROSITE profile | PS51032 | 19.427 | 39 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-27 | 39 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-19 | 39 | 96 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.2E-13 | 39 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-36 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-8 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-8 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MAPSPSPILL SPPSTDRKRK APDAADDHPP APAMRGRKRF VGVRQRPSGR WVAEIKDTIQ 60 KIRVWLGTFD TAEDAARAYD EAACLLRGSN TRTNFWPRPS PPPMSPVATP TATPALPSKV 120 TDLLLLRLKA RHNTNQQLAG AVAETAVEKT AVPTVAEEVF VRGRGHGEEE EEYGLGLFHV 180 DDFLSDECSN ENSSFSFSSS GSGGDCNSSS SQEIDEDEEL DFQFMDEHAA AAAPACSPFE 240 VVAAELGIAA AVDGEAAATA TAWMEYERKM SASLYALTGV SECLRIRAAA GGGGSAARES 300 QLSGLREACR KKRQRESSSS SPSPAKVAAQ QKQEESPHPP PMEIGGGGDG MSEAASGADG 360 DVLMWSSLDL APICHMA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-13 | 38 | 95 | 4 | 62 | ATERF1 |
3gcc_A | 1e-13 | 38 | 95 | 4 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G14340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 1e-79 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619512.2 | 1e-103 | ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A0D9Y0X2 | 0.0 | A0A0D9Y0X2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G14340.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-22 | related to AP2 11 |