PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR12G14110.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 431aa MW: 47015 Da PI: 4.4098

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G14110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	3	25	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F +s+L+ H r + LPERR12G14110.1 3 FECQICGDPFDKRSDLNEHERIC 25 89******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.928	3	31	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MAFECQICGD PFDKRSDLNE HERICSIKDN PVEVECIYCQ ELIKNNYSRK QHELQCKKNL 60 HRQTEPSGSA QGGTDLFSGI HITRQKRTAR IELLPEQRVK KPASDYAQGV IDDAPGNPQK 120 PTTSEVKADP SVNVPGDRDP SVMQRQKEKL GDSSDHKTQT DSFSPIDDLS DIATNSEKQI 180 KTIDGGVDTR LPENRHPSTM QTQSKLPDLN LLPHNDSFCS MDDNALVRAD TDSDKEKNTD 240 NDGVLADTNS DKDITGNGGV PADKNSNEQK KTDNGGVPAD TNSDKEKKTD NGGVPADTNS 300 DKEKTDNGGA DINNPQHKDP SVMEVQNKLD LNLPPRNDSF SSMDNLKTLS PIDTNSDKET 360 NTINACVDTN SDKETNTVDT GVDANSDKET NTVNAGVDIN DPDDQDPPAK PMGNKLGLNL 420 LPRSDSSDSS V

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MAFECQICGD PFDKRSDLNE HERICSIKDN PVEVECIYCQ ELIKNNYSRK QHELQCKKNL  60
HRQTEPSGSA QGGTDLFSGI HITRQKRTAR IELLPEQRVK KPASDYAQGV IDDAPGNPQK  120
PTTSEVKADP SVNVPGDRDP SVMQRQKEKL GDSSDHKTQT DSFSPIDDLS DIATNSEKQI  180
KTIDGGVDTR LPENRHPSTM QTQSKLPDLN LLPHNDSFCS MDDNALVRAD TDSDKEKNTD  240
NDGVLADTNS DKDITGNGGV PADKNSNEQK KTDNGGVPAD TNSDKEKKTD NGGVPADTNS  300
DKEKTDNGGA DINNPQHKDP SVMEVQNKLD LNLPPRNDSF SSMDNLKTLS PIDTNSDKET  360
NTINACVDTN SDKETNTVDT GVDANSDKET NTVNAGVDIN DPDDQDPPAK PMGNKLGLNL  420
LPRSDSSDSS V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G14110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619352.1	9e-55	uncharacterized protein LOC4352629
Refseq	XP_015619353.1	9e-55	uncharacterized protein LOC4352629
TrEMBL	A0A0D9Y0U0	0.0	A0A0D9Y0U0_9ORYZ; Uncharacterized protein
STRING	LPERR12G14110.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9112	22	29