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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR12G13550.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
Dof |
| Protein Properties |
Length: 344aa MW: 35006.9 Da PI: 8.8918 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR12G13550.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 120.8 | 4.8e-38 | 112 | 169 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
+l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s
LPERR12G13550.1 112 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 169
679***************************************************9886 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MVFSSLPIFL DPPNWTQIQQ QPLHCLLGGG GAGAGDHHHL MPPPSALAPL PISNSVTGDT 60
AVSAPASGGG ISSSSARPPP PATPAAAASS PAVVSMSERA RLARVPLPEP GTLRCPRCDS 120
TNTKFCYFNN YSLSQPRHFC KACRRYWTRG GALRNVPVGG GCRRNTKRSS KKSSSSSSSA 180
TSSRHVGAGG AVAATSSSST TSTSTTATTT SAADVIAGIQ GFPSAAALEA ALQEAGYHHH 240
HNHNHHHGNL QLLQPPPAFL PTGMNGYHFA DGDGGVIADG GFPRGVVASG LLAQLASVKM 300
EEHGVGNGGF VGGHEQYWTG GGGGGGWPAE FLSGFSSSSS GNVL
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK288349 | 1e-76 | AK288349.1 Oryza sativa Japonica Group cDNA, clone: J090023P19, full insert sequence. |
| GenBank | AL731784 | 1e-76 | AL731784.3 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 1e-76 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
