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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G11960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 189aa MW: 19682.6 Da PI: 5.3435 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.1 | 8.4e-05 | 44 | 84 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr R + + ++eL +llP + + +Ka+++e A e++k L LPERR12G11960.1 44 RRPRPTMGELYSELASLLPGL----PYRANKADMVEAAAEHVKVL 84 7778888999**********6....279*************9977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.445 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-7 | 41 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-5 | 43 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MAFMAGGGYR LELSLACADP TPTPAPEAAM DDLRAAPLQR RWDRRPRPTM GELYSELASL 60 LPGLPYRANK ADMVEAAAEH VKVLEDTVAV LEAYRAVQAG GVAGAAGEVS VSYRDTVCFA 120 ARLPPPAATR RGALTRVLEA FDRRGVEVYA ATVARAGAGG DGAAMVTVTA AAAAPEVVKM 180 IKADIAGIE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G11960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620183.1 | 6e-46 | uncharacterized protein LOC107278004 | ||||
TrEMBL | A0A0D9XZZ7 | 1e-128 | A0A0D9XZZ7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G11960.1 | 1e-129 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 |