PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GRF

Protein Properties

Length: 436aa MW: 46689 Da PI: 9.2359

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G10130.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.1	1.5e-23	126	170	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e LPERR12G10130.1 126 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 170 689***************************************986 PP
2	QLQ	58.5	1.9e-20	55	91	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+++an+PvP+ Ll++i++ LPERR12G10130.1 55 GPFTPTQWMELEHQALIYKHIVANAPVPAGLLLPIRR 91 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.3E-11	55	91	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.836	56	91	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.0E-15	56	90	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.527	126	170	IPR014977	WRC domain
Pfam	PF08879	9.5E-20	128	169	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MAMATPTHGS FLLGSGGYPG AQMLSFSSGY SGNAGLERGS SDVTSMQGVL ARVRGPFTPT 60 QWMELEHQAL IYKHIVANAP VPAGLLLPIR RSLHPPVFSH FSSGGILGSS SLGWGSFQLG 120 YSGSADSEPG RCRRTDGKKW RCSRDAVVDQ KYCERHINRG RHRSRKHVEG QSSHAAKPTV 180 AVAPPPLGAS NGKSSGSHGM SHELTKTLAA NLTDPCPNHF NRMLLDKTNL TEHSQDYTNQ 240 RHKPNILQNT KGDNWSEEMS SQADCVVIPA GSLMNTPQSG NVNLMPQQQH SKQSQPNLVQ 300 LHFGNRIHHD DIQLSISIPV ENSNLSTNHK AQIGPAVGIS SNKGNAARPS WVPDSWETSI 360 GGPLGEFFTN TSNASDDKSK SRHPPSLNVV ADGHTTSPQL QSPTGVLQMT NFSSVPSSTV 420 SSPGTASAMA CSLQAW

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MAMATPTHGS FLLGSGGYPG AQMLSFSSGY SGNAGLERGS SDVTSMQGVL ARVRGPFTPT  60
QWMELEHQAL IYKHIVANAP VPAGLLLPIR RSLHPPVFSH FSSGGILGSS SLGWGSFQLG  120
YSGSADSEPG RCRRTDGKKW RCSRDAVVDQ KYCERHINRG RHRSRKHVEG QSSHAAKPTV  180
AVAPPPLGAS NGKSSGSHGM SHELTKTLAA NLTDPCPNHF NRMLLDKTNL TEHSQDYTNQ  240
RHKPNILQNT KGDNWSEEMS SQADCVVIPA GSLMNTPQSG NVNLMPQQQH SKQSQPNLVQ  300
LHFGNRIHHD DIQLSISIPV ENSNLSTNHK AQIGPAVGIS SNKGNAARPS WVPDSWETSI  360
GGPLGEFFTN TSNASDDKSK SRHPPSLNVV ADGHTTSPQL QSPTGVLQMT NFSSVPSSTV  420
SSPGTASAMA CSLQAW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G10130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241557	0.0	AK241557.1 Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015698579.1	0.0	PREDICTED: growth-regulating factor 7-like
Swissprot	Q6AWY2	0.0	GRF7_ORYSJ; Growth-regulating factor 7
TrEMBL	A0A0D9XZD0	0.0	A0A0D9XZD0_9ORYZ; Uncharacterized protein
STRING	LPERR12G10130.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	8e-42	growth-regulating factor 1