PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G08360.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 450aa    MW: 48171.1 Da    PI: 8.3282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G08360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-116691227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C++++rtG C++G +CkF+H+p
  LPERR12G08360.1 66 GEPDCSYYMRTGLCRFGMTCKFNHPP 91
                     5799********************97 PP
2zf-CCCH38.81.6e-12112136327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  LPERR12G08360.1 112 QPECQYYLKTGTCKFGATCKFHHPR 136
                      799********************96 PP
3zf-CCCH314.2e-10158182327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+ ++CkF+H++
  LPERR12G08360.1 158 EKECAYYLRTGQCKFASTCKFHHPQ 182
                      679********************97 PP
4zf-CCCH39.59.3e-13316341227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  LPERR12G08360.1 316 DQPECQFYMKTGDCKFGAVCKFHHPK 341
                      689*********************96 PP
5zf-CCCH37.54e-12361387127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C f++r+G+Ck+G++CkF H++
  LPERR12G08360.1 361 PGEPVCTFYSRYGICKFGPNCKFDHPM 387
                      5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.6E-56491IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5356492IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-96691IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-56892IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-47090IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6109136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441109137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6111138IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10112136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5115137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6154183IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286155183IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7158182IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511314342IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5317344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-5320342IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7360387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99360388IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9362387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6364389IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4365385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAAGAGAGVG GGEGGAGNGG GVTSPATAAA AIGTHHLGVA AAEEAMWQMT LGGESIESAP  60
YPERLGEPDC SYYMRTGLCR FGMTCKFNHP PNRKLAVAAA RMNGEYPYRV GQPECQYYLK  120
TGTCKFGATC KFHHPREKAA LATRVQLNVL GYPMRPSEKE CAYYLRTGQC KFASTCKFHH  180
PQPSNTMVAV RSSMYSPGQS ATSPGQPTYP GVTNWTMSRS ASFIASPRWP GHSGYAQVIV  240
PQGLVQVPGW NPYAAQMGSS SPDDQQRTPV TTQYYGSRQN ETAGMGDHGV FQSYQAGSVP  300
VGVYVQGENV FPERPDQPEC QFYMKTGDCK FGAVCKFHHP KERLVPAPNC ALNSLGLPLR  360
PGEPVCTFYS RYGICKFGPN CKFDHPMGTL MYGSATSPTG DVSSMHYQLS PSPGHSGRLL  420
DGGSGRSHRV PQSDSQQIPS GDGNAEREAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G08360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115110.0AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663969.10.0PREDICTED: zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0D9XYT00.0A0A0D9XYT0_9ORYZ; Uncharacterized protein
STRINGLPERR12G08360.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-153zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]