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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G07370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C3H | ||||||||
Protein Properties | Length: 528aa MW: 57253.8 Da PI: 6.894 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.7e-09 | 109 | 134 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ ++G C++G +CkF+H+ LPERR12G07370.1 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134 5789*********************8 PP | |||||||
2 | zf-CCCH | 26 | 1.6e-08 | 239 | 261 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G +Ck+ H LPERR12G07370.1 239 QEECKYYSTPGGCKFGKSCKYLH 261 589******************** PP | |||||||
3 | zf-CCCH | 34.6 | 3.3e-11 | 286 | 310 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +CkF+H+ LPERR12G07370.1 286 GEKECPYYMRTGSCKYATNCKFHHP 310 7899********************9 PP | |||||||
4 | zf-CCCH | 19.9 | 1.3e-06 | 432 | 458 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ +Ck++H++ LPERR12G07370.1 432 PGQPECQHFVKSGFCKFRMKCKYHHPR 458 5789*********************96 PP | |||||||
5 | zf-CCCH | 25 | 3.3e-08 | 478 | 503 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G CkyG+ C ++H++ LPERR12G07370.1 478 DQPVCTYYGRYGVCKYGPACAYNHPF 503 6899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0013 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.258 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-6 | 110 | 134 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.075 | 236 | 264 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0022 | 237 | 263 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-6 | 239 | 261 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-5 | 240 | 263 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 242 | 262 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 284 | 311 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.793 | 284 | 312 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-8 | 286 | 310 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 287 | 311 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 290 | 309 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.028 | 431 | 458 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.676 | 431 | 459 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-5 | 435 | 460 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 474 | 502 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0042 | 476 | 503 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.732 | 476 | 504 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-6 | 478 | 503 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MADADARAPL PESATSPIGS VSPSSPRSPS AAAAAAAAAE DVVEEQLAGL AIADQEEGEE 60 EEELGLPKPT GWEDGGGEEK LLVRPGGEVA AVVEGGAAAD SRPRFPRRPG EPDCTYYVKF 120 GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGSSNSSSNK ASSPDDEQAP KEEYGSYVPN 180 ISADVDSLGF ADKGSTSNSE NFKKTSYEII DVKKGRVEPK ELKVAKEKRK DFFSEGGSQE 240 ECKYYSTPGG CKFGKSCKYL HRDGKDGKSE AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK 300 YATNCKFHHP DPSNVASKDP QLERENGDTP QQDVQGSSSQ PNAPIWPDQK TVNEHHVPFL 360 APSPSYSAGM LPPQGMYHPP EWNGYHQVPL NPYYPPAVPF QHFPAPINHP MYKAPEIPGH 420 QQVPSEEYPE RPGQPECQHF VKSGFCKFRM KCKYHHPRSQ VPPSAGALSP LGLPIKPDQP 480 VCTYYGRYGV CKYGPACAYN HPFNFGPVPA AGPPLLPAQY PSPGNYTL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G07370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111498 | 0.0 | AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620303.1 | 0.0 | zinc finger CCCH domain-containing protein 65 isoform X4 | ||||
Swissprot | Q2QTY2 | 0.0 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | A0A0D9XYG5 | 0.0 | A0A0D9XYG5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G07370.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7928 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.2 | 7e-64 | C3H family protein |
Publications ? help Back to Top | |||
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