PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G07370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 528aa    MW: 57253.8 Da    PI: 6.894
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G07370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-09109134126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C ++ ++G C++G +CkF+H+
  LPERR12G07370.1 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134
                      5789*********************8 PP
2zf-CCCH261.6e-08239261325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      +e+C++++  G Ck+G +Ck+ H
  LPERR12G07370.1 239 QEECKYYSTPGGCKFGKSCKYLH 261
                      589******************** PP
3zf-CCCH34.63.3e-11286310226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG Cky  +CkF+H+
  LPERR12G07370.1 286 GEKECPYYMRTGSCKYATNCKFHHP 310
                      7899********************9 PP
4zf-CCCH19.91.3e-06432458127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f ++G+Ck+  +Ck++H++
  LPERR12G07370.1 432 PGQPECQHFVKSGFCKFRMKCKYHHPR 458
                      5789*********************96 PP
5zf-CCCH253.3e-08478503227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ r+G CkyG+ C ++H++
  LPERR12G07370.1 478 DQPVCTYYGRYGVCKYGPACAYNHPF 503
                      6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258108136IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6110134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075236264IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022237263IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-6239261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-5240263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4242262IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5284311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793284312IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8286310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6287311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4290309IPR000571Zinc finger, CCCH-type
SMARTSM003560.028431458IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676431459IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-5435460IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5474502IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042476503IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732476504IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-6478503IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MADADARAPL PESATSPIGS VSPSSPRSPS AAAAAAAAAE DVVEEQLAGL AIADQEEGEE  60
EEELGLPKPT GWEDGGGEEK LLVRPGGEVA AVVEGGAAAD SRPRFPRRPG EPDCTYYVKF  120
GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGSSNSSSNK ASSPDDEQAP KEEYGSYVPN  180
ISADVDSLGF ADKGSTSNSE NFKKTSYEII DVKKGRVEPK ELKVAKEKRK DFFSEGGSQE  240
ECKYYSTPGG CKFGKSCKYL HRDGKDGKSE AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK  300
YATNCKFHHP DPSNVASKDP QLERENGDTP QQDVQGSSSQ PNAPIWPDQK TVNEHHVPFL  360
APSPSYSAGM LPPQGMYHPP EWNGYHQVPL NPYYPPAVPF QHFPAPINHP MYKAPEIPGH  420
QQVPSEEYPE RPGQPECQHF VKSGFCKFRM KCKYHHPRSQ VPPSAGALSP LGLPIKPDQP  480
VCTYYGRYGV CKYGPACAYN HPFNFGPVPA AGPPLLPAQY PSPGNYTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G07370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114980.0AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620303.10.0zinc finger CCCH domain-containing protein 65 isoform X4
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0D9XYG50.0A0A0D9XYG5_9ORYZ; Uncharacterized protein
STRINGLPERR12G07370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.27e-64C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]