PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G03580.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 441aa    MW: 49963.6 Da    PI: 6.6785
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G03580.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.75e-26117213186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++ +++++++d
  LPERR12G03580.2 117 KWTDSMVKLLITAVSYTGEDPGADSgagrrnsammQKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGtACKIVENHALLD 210
                      7*********************9877778888999**********************************************5599999999998 PP

         trihelix  84 qle 86 
                       ++
  LPERR12G03580.2 211 CMN 213
                      886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-20115239No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEGSNLPSGK LMQGTPYATL DLHSNPVQMH APNPGKQGFD HTQIPGNISM HVNQSTDSDH  60
LSEFQFGELG KADHHHHHHH HHTKNGMSDD EDHGVNEDAT DSQSGKGKKG SAWQRMKWTD  120
SMVKLLITAV SYTGEDPGAD SGAGRRNSAM MQKKGKWKAI SKVMGERGCN VSPQQCEDKF  180
NDLNKRYKRL TDILGRGTAC KIVENHALLD CMNNLSDKMK DDARKILSSK HLFYEEMCSY  240
HNNNRVSLPE DPALQRALQL ALRCKEEHDL KRGISGDADE DDQSSDSDSE EENDEEHYML  300
QGDKSAMPMH KRLRYMPDQE DVGFGNSSSS HGCSRRSDSH GITLDINRAF PDGTNLALVQ  360
KDLATQSADL EEKRLQIEVQ AVYLAKRRLK WERFSKSKDR ELEQMRLENE RMKLENKRLE  420
LDVRHKELEL ELKQKGSGNH A
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G03580.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1031220.0AK103122.1 Oryza sativa Japonica Group cDNA clone:J033119K12, full insert sequence.
GenBankAL7139360.0AL713936.4 Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698803.10.0PREDICTED: uncharacterized protein LOC102711209
RefseqXP_015698804.10.0PREDICTED: uncharacterized protein LOC102711209
TrEMBLA0A0D9XX550.0A0A0D9XX55_9ORYZ; Uncharacterized protein
STRINGLPERR12G03580.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.19e-83