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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G02370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GRAS | ||||||||
Protein Properties | Length: 1009aa MW: 112202 Da PI: 7.1155 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 294.1 | 3.7e-90 | 76 | 495 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshl 96 L+ecA +v++g++e+++ L+++++l s ++ p+qRl + ++ La+rl++ ++ ++al +ps+ + +s aa f ++sP+l +++ LPERR12G02370.1 76 ILYECAAHVTEGSFEKTDCSLQKIRKLTSIADGPLQRLSTIIVDSLAHRLLSPIQGFADALiKPSDYF-E-QSCLRAAWYNFANLSPYLSTGFV 167 599*************************************************9999999995555544.2.3333344456************* PP GRAS 97 taNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 t NqaI+eave e+ vHi+D++ s ++ QW+ Ll+ + Rpegpp+l +T++++ + e l +++ L+k Ae+l+v+f+f v rle+ LPERR12G02370.1 168 TINQAIMEAVEDEKVVHIVDLSCSttHPWQWIKLLHDFRRRPEGPPELYLTVIHD----DGEFLANMQALLSKEAESLEVSFHFIS-VIGRLET 256 *********************8643389***************************....***************************.7999*** PP GRAS 189 leleeL....rvkpgEalaVnlvlqlhrll..............................................desvsleserdevLklvk 232 l+++++ ++k g a+a++++lq+hrll + + ++++ ++L++++ LPERR12G02370.1 257 LDFSDIrstfQIKYGAAVAISCALQMHRLLviddnlrstgiaqlqqmsnftqikqmassvcspsstlnyihyiqtpSPPCHVPKLLARLLSAIR 350 *9999954445666***********************************************************998777788888999****** PP GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 sl+P+++v++eq+a+hn+ F +rf+e l+yy+alfds++a pr ++er vEr++lg+ei+n++ ceg +r erhe+l +W + ++ +G LPERR12G02370.1 351 SLKPNIMVIMEQDASHNTLLFHDRFVEVLNYYAALFDSFHAAaaaNPRSTDERLRVERMILGEEIKNILVCEGVHRHERHERLDQWAMYMGGSG 444 ***************************************65512235556******************************************** PP GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 F +vpls +a + k l ++ + + +e++ +l+l+W + +L+s+SaWr LPERR12G02370.1 445 FDNVPLSFSAIREGKEKLLSFGLKNCQSKEDRCCLLLCWGSTNLYSISAWR 495 **********************888*************************8 PP | |||||||
2 | GRAS | 343.9 | 2.6e-105 | 563 | 996 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilk 92 l++lL++c v++g++ +a+ +L+++ +l+s d+ ++qRlaa+f+ ALa++l++ v++l++al ++s++++ +s ++aa++ +++ P+lk LPERR12G02370.1 563 LISLLYQCSAEVAAGSFDRANLCLEHITQLSSLDApHALQRLAAVFADALARKLLNLVPGLSRALlSSSAANSAESHLVTAARRHMFDALPFLK 656 5799*******************************9****************************966666666668888899999********* PP GRAS 93 fshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 +++lt+N+aIlea+ege+ vH++Df+ + +++QW+aL++a+ R+egpp+lRiT+v++ sk+ l +++ L+k Ae++++ f+fn++ a+ LPERR12G02370.1 657 LAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHE----SKDFLANMAAVLSKEAEAFDIAFQFNAVEAS 746 *************************966899****************************....9**************************8333 PP GRAS 185 ..rledle..leeLrvkpgEalaVnlvlqlhrll.....................................................desvsle 221 +++d++ + L v++gEalaV++vlqlhrll + s++ + LPERR12G02370.1 747 ldEMDDFDalHRVLGVRSGEALAVSVVLQLHRLLataddnnggarrhaltplqiiarssprsfgellerelntrlqlspdtpphsplATSTTAP 840 224444431145679999*****************************************************************99876666666 PP GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 + ++L+ v+slsPk++vv+eqea+hn+ F erf eal+yy++lfd+l+ + + er vEr+llg+ei+ vva eg+errerhe++++W LPERR12G02370.1 841 K-LGSFLSSVRSLSPKIMVVTEQEASHNGVAFNERFDEALNYYASLFDCLQRSSALSPAERGRVERVLLGEEIRGVVAREGKERRERHERARQW 933 6.999*********************************************99977777************************************ PP GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdg.yrveee...sgslvlgWkdrpLvsvSaWr 374 +r+e+aG++ v +s++aa +a ll+ +++ g y+v ++ +g ++++W+++pL++vS+Wr LPERR12G02370.1 934 AARMEAAGMERVGISYSAALEAGKLLQSCGWAGpYEVRHDaagHGFFFFCWHKKPLYAVSSWR 996 ******************************8888****8766678888**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.223 | 47 | 475 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-87 | 76 | 495 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 49.463 | 537 | 972 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.1E-103 | 563 | 996 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 1009 aa Download sequence Send to blast |
MEMAGFAGVP LSYDAIRQGN DMVRRSGAEA ISAWRPTASR GLGSDSERNE YMSKIMYGPK 60 TRDQGMAHHL AQLGPILYEC AAHVTEGSFE KTDCSLQKIR KLTSIADGPL QRLSTIIVDS 120 LAHRLLSPIQ GFADALIKPS DYFEQSCLRA AWYNFANLSP YLSTGFVTIN QAIMEAVEDE 180 KVVHIVDLSC STTHPWQWIK LLHDFRRRPE GPPELYLTVI HDDGEFLANM QALLSKEAES 240 LEVSFHFISV IGRLETLDFS DIRSTFQIKY GAAVAISCAL QMHRLLVIDD NLRSTGIAQL 300 QQMSNFTQIK QMASSVCSPS STLNYIHYIQ TPSPPCHVPK LLARLLSAIR SLKPNIMVIM 360 EQDASHNTLL FHDRFVEVLN YYAALFDSFH AAAAANPRST DERLRVERMI LGEEIKNILV 420 CEGVHRHERH ERLDQWAMYM GGSGFDNVPL SFSAIREGKE KLLSFGLKNC QSKEDRCCLL 480 LCWGSTNLYS ISAWRPNMGS PSLIREHMLQ LRLCCTNRSM FQDDMLSSAT SSPASSSVFS 540 PSFSPSNGSW VQELSHDHQS VRLISLLYQC SAEVAAGSFD RANLCLEHIT QLSSLDAPHA 600 LQRLAAVFAD ALARKLLNLV PGLSRALLSS SAANSAESHL VTAARRHMFD ALPFLKLAYL 660 TTNHAILEAM EGERFVHVVD FSGPAANPVQ WIALFHAFRG RREGPPHLRI TAVHESKDFL 720 ANMAAVLSKE AEAFDIAFQF NAVEASLDEM DDFDALHRVL GVRSGEALAV SVVLQLHRLL 780 ATADDNNGGA RRHALTPLQI IARSSPRSFG ELLERELNTR LQLSPDTPPH SPLATSTTAP 840 KLGSFLSSVR SLSPKIMVVT EQEASHNGVA FNERFDEALN YYASLFDCLQ RSSALSPAER 900 GRVERVLLGE EIRGVVAREG KERRERHERA RQWAARMEAA GMERVGISYS AALEAGKLLQ 960 SCGWAGPYEV RHDAAGHGFF FFCWHKKPLY AVSSWRPAAS MSCCRHTRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-34 | 79 | 997 | 6 | 379 | Protein SCARECROW |
5b3h_D | 1e-34 | 79 | 997 | 6 | 379 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G02370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619625.1 | 0.0 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0D9XWR9 | 0.0 | A0A0D9XWR9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G02370.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 7e-89 | scarecrow-like 3 |