PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G02370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 1009aa    MW: 112202 Da    PI: 7.1155
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G02370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.13.7e-90764954374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshl 96 
                       L+ecA +v++g++e+++  L+++++l s ++ p+qRl + ++  La+rl++  ++ ++al +ps+   + +s   aa   f ++sP+l  +++
  LPERR12G02370.1  76 ILYECAAHVTEGSFEKTDCSLQKIRKLTSIADGPLQRLSTIIVDSLAHRLLSPIQGFADALiKPSDYF-E-QSCLRAAWYNFANLSPYLSTGFV 167
                      599*************************************************9999999995555544.2.3333344456************* PP

             GRAS  97 taNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      t NqaI+eave e+ vHi+D++ s  ++ QW+ Ll+ +  Rpegpp+l +T++++    + e l +++  L+k Ae+l+v+f+f   v  rle+
  LPERR12G02370.1 168 TINQAIMEAVEDEKVVHIVDLSCSttHPWQWIKLLHDFRRRPEGPPELYLTVIHD----DGEFLANMQALLSKEAESLEVSFHFIS-VIGRLET 256
                      *********************8643389***************************....***************************.7999*** PP

             GRAS 189 leleeL....rvkpgEalaVnlvlqlhrll..............................................desvsleserdevLklvk 232
                      l+++++    ++k g a+a++++lq+hrll                                              + + ++++   ++L++++
  LPERR12G02370.1 257 LDFSDIrstfQIKYGAAVAISCALQMHRLLviddnlrstgiaqlqqmsnftqikqmassvcspsstlnyihyiqtpSPPCHVPKLLARLLSAIR 350
                      *9999954445666***********************************************************998777788888999****** PP

             GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                      sl+P+++v++eq+a+hn+  F +rf+e l+yy+alfds++a     pr ++er  vEr++lg+ei+n++ ceg +r erhe+l +W + ++ +G
  LPERR12G02370.1 351 SLKPNIMVIMEQDASHNTLLFHDRFVEVLNYYAALFDSFHAAaaaNPRSTDERLRVERMILGEEIKNILVCEGVHRHERHERLDQWAMYMGGSG 444
                      ***************************************65512235556******************************************** PP

             GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      F +vpls +a  + k  l  ++ +  + +e++ +l+l+W + +L+s+SaWr
  LPERR12G02370.1 445 FDNVPLSFSAIREGKEKLLSFGLKNCQSKEDRCCLLLCWGSTNLYSISAWR 495
                      **********************888*************************8 PP

2GRAS343.92.6e-1055639961374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilk 92 
                      l++lL++c   v++g++ +a+ +L+++ +l+s d+  ++qRlaa+f+ ALa++l++ v++l++al ++s++++ +s  ++aa++  +++ P+lk
  LPERR12G02370.1 563 LISLLYQCSAEVAAGSFDRANLCLEHITQLSSLDApHALQRLAAVFADALARKLLNLVPGLSRALlSSSAANSAESHLVTAARRHMFDALPFLK 656
                      5799*******************************9****************************966666666668888899999********* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      +++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    sk+ l +++  L+k Ae++++ f+fn++ a+
  LPERR12G02370.1 657 LAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHE----SKDFLANMAAVLSKEAEAFDIAFQFNAVEAS 746
                      *************************966899****************************....9**************************8333 PP

             GRAS 185 ..rledle..leeLrvkpgEalaVnlvlqlhrll.....................................................desvsle 221
                        +++d++   + L v++gEalaV++vlqlhrll                                                     + s++ +
  LPERR12G02370.1 747 ldEMDDFDalHRVLGVRSGEALAVSVVLQLHRLLataddnnggarrhaltplqiiarssprsfgellerelntrlqlspdtpphsplATSTTAP 840
                      224444431145679999*****************************************************************99876666666 PP

             GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                      +   ++L+ v+slsPk++vv+eqea+hn+  F erf eal+yy++lfd+l+ + +    er  vEr+llg+ei+ vva eg+errerhe++++W
  LPERR12G02370.1 841 K-LGSFLSSVRSLSPKIMVVTEQEASHNGVAFNERFDEALNYYASLFDCLQRSSALSPAERGRVERVLLGEEIRGVVAREGKERRERHERARQW 933
                      6.999*********************************************99977777************************************ PP

             GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdg.yrveee...sgslvlgWkdrpLvsvSaWr 374
                       +r+e+aG++ v +s++aa +a  ll+ +++ g y+v ++   +g ++++W+++pL++vS+Wr
  LPERR12G02370.1 934 AARMEAAGMERVGISYSAALEAGKLLQSCGWAGpYEVRHDaagHGFFFFCWHKKPLYAVSSWR 996
                      ******************************8888****8766678888**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.22347475IPR005202Transcription factor GRAS
PfamPF035141.3E-8776495IPR005202Transcription factor GRAS
PROSITE profilePS5098549.463537972IPR005202Transcription factor GRAS
PfamPF035149.1E-103563996IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1009 aa     Download sequence    Send to blast
MEMAGFAGVP LSYDAIRQGN DMVRRSGAEA ISAWRPTASR GLGSDSERNE YMSKIMYGPK  60
TRDQGMAHHL AQLGPILYEC AAHVTEGSFE KTDCSLQKIR KLTSIADGPL QRLSTIIVDS  120
LAHRLLSPIQ GFADALIKPS DYFEQSCLRA AWYNFANLSP YLSTGFVTIN QAIMEAVEDE  180
KVVHIVDLSC STTHPWQWIK LLHDFRRRPE GPPELYLTVI HDDGEFLANM QALLSKEAES  240
LEVSFHFISV IGRLETLDFS DIRSTFQIKY GAAVAISCAL QMHRLLVIDD NLRSTGIAQL  300
QQMSNFTQIK QMASSVCSPS STLNYIHYIQ TPSPPCHVPK LLARLLSAIR SLKPNIMVIM  360
EQDASHNTLL FHDRFVEVLN YYAALFDSFH AAAAANPRST DERLRVERMI LGEEIKNILV  420
CEGVHRHERH ERLDQWAMYM GGSGFDNVPL SFSAIREGKE KLLSFGLKNC QSKEDRCCLL  480
LCWGSTNLYS ISAWRPNMGS PSLIREHMLQ LRLCCTNRSM FQDDMLSSAT SSPASSSVFS  540
PSFSPSNGSW VQELSHDHQS VRLISLLYQC SAEVAAGSFD RANLCLEHIT QLSSLDAPHA  600
LQRLAAVFAD ALARKLLNLV PGLSRALLSS SAANSAESHL VTAARRHMFD ALPFLKLAYL  660
TTNHAILEAM EGERFVHVVD FSGPAANPVQ WIALFHAFRG RREGPPHLRI TAVHESKDFL  720
ANMAAVLSKE AEAFDIAFQF NAVEASLDEM DDFDALHRVL GVRSGEALAV SVVLQLHRLL  780
ATADDNNGGA RRHALTPLQI IARSSPRSFG ELLERELNTR LQLSPDTPPH SPLATSTTAP  840
KLGSFLSSVR SLSPKIMVVT EQEASHNGVA FNERFDEALN YYASLFDCLQ RSSALSPAER  900
GRVERVLLGE EIRGVVAREG KERRERHERA RQWAARMEAA GMERVGISYS AALEAGKLLQ  960
SCGWAGPYEV RHDAAGHGFF FFCWHKKPLY AVSSWRPAAS MSCCRHTRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-34799976379Protein SCARECROW
5b3h_D1e-34799976379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G02370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619625.10.0scarecrow-like protein 3
TrEMBLA0A0D9XWR90.0A0A0D9XWR9_9ORYZ; Uncharacterized protein
STRINGLPERR12G02370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-89scarecrow-like 3