PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 146aa MW: 16199.6 Da PI: 7.4683

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G00030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.5	2.3e-43	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l+++p +r da+sslvyeA+ar+rdPvyG+v+ i+ lqqq+++l+ +l LPERR12G00030.1 8 PCASCKLLRRRCTAECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLQEVPAAQRADAVSSLVYEANARVRDPVYGCVAAISFLQQQVSHLQMQL 101 7********************************************************************************************* PP DUF260 95 allkee 100 al+++e LPERR12G00030.1 102 ALAHAE 107 *99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.246	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-43	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MAGSGGTPCA SCKLLRRRCT AECVFAPYFP AEEAQRFAMV HRVFGASNVS KMLQEVPAAQ 60 RADAVSSLVY EANARVRDPV YGCVAAISFL QQQVSHLQMQ LALAHAETSA LQLQLQDERQ 120 QHILVQNAHH QLMLQEACLK QESMWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-47	6	107	9	110	LOB family transfactor Ramosa2.1
5ly0_B	2e-47	6	107	9	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G00030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109211	1e-131	AK109211.1 Oryza sativa Japonica Group cDNA clone:002-156-D02, full insert sequence.
GenBank	AK241761	1e-131	AK241761.1 Oryza sativa Japonica Group cDNA, clone: J065205C18, full insert sequence.
GenBank	AP014967	1e-131	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	AP014968	1e-131	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	BX000494	1e-131	BX000494.2 Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	BX000497	1e-131	BX000497.1 Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618081.1	3e-75	LOB domain-containing protein 12
Refseq	XP_015618082.1	3e-75	LOB domain-containing protein 12
Refseq	XP_015618083.1	3e-75	LOB domain-containing protein 12
Refseq	XP_015697528.1	3e-75	PREDICTED: LOB domain-containing protein 12-like
Refseq	XP_025877106.1	3e-75	LOB domain-containing protein 12
Refseq	XP_025877964.1	3e-75	LOB domain-containing protein 12
Swissprot	Q8LBW3	2e-59	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0D9XVT7	1e-102	A0A0D9XVT7_9ORYZ; Uncharacterized protein
STRING	LPERR12G00030.1	1e-103	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-62	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]