PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G20490.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 266aa    MW: 29303.3 Da    PI: 6.5133
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G20490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000115375123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  LPERR11G20490.1 53 YTCSFCQREFRSAQALGGHMNVH 75
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.92E-65079No hitNo description
PROSITE profilePS5015711.2615380IPR007087Zinc finger, C2H2
SMARTSM003550.00315375IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-55376IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEQRGDGMWG AAAAAGRSTR SIAVPSPAAA YEQSWEEQAF ARDAGAVWPP RFYTCSFCQR  60
EFRSAQALGG HMNVHRRDRA RLRLRSPSPG PGRHHQQQQE DDQEEAEAAS ASFSKPKNTN  120
NNCTTSKDDD ILLGVSISTC ASRSSSSSAA AAIIRESIKK RALVPMRQQE EEEEAPDDEE  180
DDHDQQEFAG RRSKKRRRRL VDQLPSCDHH QVVANKVLIT STSPSSISAS ALVDQQNQQA  240
AVVGVLDLEL RLGTTPKAVL NMHEID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-134875229superman protein
2l1o_A8e-134875229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190198RRSKKRRRR
2193198KKRRRR
3194199KRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G20490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330084e-39AC133008.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence.
GenBankAP0149674e-39AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126194e-39CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697754.18e-49PREDICTED: uncharacterized protein LOC102708482
TrEMBLA0A0D9XVS50.0A0A0D9XVS5_9ORYZ; Uncharacterized protein
STRINGLPERR11G20490.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174901111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-19zinc-finger protein 10