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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
LPERR11G20170.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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| Family |
C2H2 |
| Protein Properties |
Length: 261aa MW: 28063.2 Da PI: 11.7792 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR11G20170.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.3 | 0.0011 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C Cg++F + L H +H
LPERR11G20170.1 52 FQCRTCGRRFATFQALGGHRTSH 74
89*********999998888777 PP
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| 2 | zf-C2H2 | 17.6 | 1.1e-05 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C Cgk+F + L H+r+H
LPERR11G20170.1 107 HRCDMCGKVFATGQALGGHMRRH 129
79********************9 PP
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| 3 | zf-C2H2 | 12.3 | 0.0005 | 169 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C Cg++F+++ L H +H
LPERR11G20170.1 169 FECRTCGRRFTSHQALGGHRTSH 191
89*************99998887 PP
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| 4 | zf-C2H2 | 11.4 | 0.00098 | 209 | 231 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ Cg+ F L H+r+H
LPERR11G20170.1 209 HECEVCGMGFEMGQALGGHMRRH 231
78********************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 6.75E-9 | 52 | 74 | No hit | No description |
| SMART | SM00355 | 0.19 | 52 | 74 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.699 | 52 | 79 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 5.9E-9 | 52 | 76 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 6.75E-9 | 102 | 129 | No hit | No description |
| Pfam | PF13912 | 5.6E-12 | 106 | 130 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 6.2E-4 | 107 | 129 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0028 | 107 | 129 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.471 | 107 | 129 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 1.0E-8 | 168 | 193 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.13 | 169 | 191 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.575 | 169 | 196 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.34E-7 | 169 | 231 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 171 | 191 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 1.0E-9 | 208 | 233 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.452 | 209 | 236 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.2 | 209 | 231 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 211 | 231 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 261 aa
Download sequence Send
to blast |
MEVATNSTNN STRSPVKLML VLTLSPASKV IGKGGGGGGN CRRVQLDHGG EFQCRTCGRR 60
FATFQALGGH RTSHKRPRVR ADGLDLLLGA RPGKIAGAAA SSAVAVHRCD MCGKVFATGQ 120
ALGGHMRRHR PLMGTTTATM SGSSSTTSEE ERRRRGATAT ESKAAAAAFE CRTCGRRFTS 180
HQALGGHRTS HLRPTRIKGR PSLSRPVVHE CEVCGMGFEM GQALGGHMRR HRPSNVEMGL 240
KKIVVQEIRP SFTHQLLDLF I
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