PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G19510.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 1309aa    MW: 148083 Da    PI: 7.4971
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G19510.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.51.7e-2010751136159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                       +dDg++W KYG K++ g++++rsY++Ct++   gC ++k+v+ ++ dp +++++Y +eH+++
  LPERR11G19510.3 1075 VDDGFSWIKYGEKDILGAKYTRSYFQCTHReskGCLATKQVQPTDGDPLILDVIYCDEHTCD 1136
                       59***************************99999**************************96 PP
2WRKY642.5e-2011911248159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59  
                       ldDg++WrKYGqK+++gs +pr  +r + +gC+++k+v r+++dp++++++Y+g+H+++
  LPERR11G19510.3 1191 LDDGHSWRKYGQKDIQGSMHPRCTHRNS-QGCQATKQVHRNDDDPQLFDVVYHGDHTCH 1248
                       58*******************9666643.59**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147982.90E-92143No hitNo description
SuperFamilySSF525406.83E-56245507IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.2E-54253533IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3009.3E-14257392IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003642.1E-17272287No hitNo description
PRINTSPR003642.1E-17344358No hitNo description
PRINTSPR003642.1E-17441455No hitNo description
SuperFamilySSF520582.89E-23572969IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.3E-15644968IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003642.1E-17795811No hitNo description
PROSITE profilePS5081117.16710701138IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-2010701137IPR003657WRKY domain
SuperFamilySSF1182901.26E-1910731136IPR003657WRKY domain
SMARTSM007741.4E-3010751137IPR003657WRKY domain
PfamPF031066.6E-2010761136IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-2211781249IPR003657WRKY domain
PROSITE profilePS5081118.72811861245IPR003657WRKY domain
SuperFamilySSF1182901.28E-1811871249IPR003657WRKY domain
SMARTSM007742.9E-3111911249IPR003657WRKY domain
PfamPF031061.1E-1911921248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1309 aa     Download sequence    Send to blast
MEGAMFSLPA RLDGLLLPLH GSILPKGAEE EIPLIKRDLD EIISILHGHK EAEEDHANDS  60
RIMWMCWMKE VRELSYDIED CIDQFEHAAA PRYRSRSLQQ DRRRKWLSRQ RGKKQMAPWV  120
PEKLKQRLWM ANKIREFSLR SQEAIQRYAM CKNLSGIGTD FTTRGDVSIT PCHPKRFNFK  180
EHADNVRLAD AQADIDAALK KVNNLKNLLP ADSAHIVADI EAALKASLKK LKQNMLPGTP  240
TSSTTRGHVG IDSSMSKLEN WLAVCGEEKL KVVSIVGVGG VGKTTLANEL YCKLRWQFEC  300
RAFVRTSKKP DIRRILISML SQVRPHQPPD NWKVHDLISS IRTHLQDKRY LIIIDDLWAT  360
STWDIIKCTL PDGNSCSRIL ITTEIEDLAL QFCSYDSKNI FKMKPLGEDD SRTLFFSSVF  420
GSHSNCPPEL SEASYDIVRK CGGLPLAIVT IAGLLVSKLQ KQEQWDCINK SLGYSLMANP  480
NLEGMKQLLN FCYNNLPQHL RACMLYLSMY QEDTIIWKDD LVNQWIAEGF ICAIEVHNKE  540
EILSTYFDEL LGRKIVQPVH INDNGEVLSC VVHHMVLNFI THKSIEENFI VAIDHSQATT  600
RLADKVRRLS FHFGHAEDET PTNMRLSQVR TLALFGVLNL MSFITGFRLL KVLILHFWGD  660
EDSISFDLTK VSELALLRYL KVTSNVTLKL PMRMQGLQYL ETLKINGKIG AVPSDIVHLP  720
CLLHLSLPAK TNLPNGIVHM TSLRTLGYFD LSCNSTENLW SLGELINLQD LQLAYSAIQF  780
DNLNNNVQYL GSILGKLRNL KFITLSPTSS LYENTLHTNS GISVRISVDG WSSLSSPPAL  840
LQTFDLLPCV CIFSSLPNWI GQLRNLCILK IGIREVTNND VDVLGGLLAL TVLSLYVHTK  900
PAERIVFGNV GFSILKYFKF RCSLARIKFD AGTMPCLQKL KLDFNVHRAD QHDTIPIGIE  960
HLSRLEEISA KIRVACSADD LSKRFAESAL TNAIKMHSGC PRVNIRSVDW TFDGKDDISV  1020
GTREEEHRTL VRQDHTVKEG PNEISAGLQK HSVKDHIQLK TQPKERIQVR VSSMVDDGFS  1080
WIKYGEKDIL GAKYTRSYFQ CTHRESKGCL ATKQVQPTDG DPLILDVIYC DEHTCDESTL  1140
SDTQLRPSKP TESYNLQGLQ PGVEQNPAKR RRKTLMKKST QVRVSSLYDA LDDGHSWRKY  1200
GQKDIQGSMH PRCTHRNSQG CQATKQVHRN DDDPQLFDVV YHGDHTCHQM ASFNLNEQTT  1260
WWSPSSASLE QSQNLQSSSQ LEEQGSTVTC TVSTVNEEDD LLGGHIPLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C4e-42249776161694Disease resistance RPP13-like protein 4
6j5t_F4e-42249776161694Disease resistance RPP13-like protein 4
6j5t_G4e-42249776161694Disease resistance RPP13-like protein 4
6j5t_L4e-42249776161694Disease resistance RPP13-like protein 4
6j5t_O4e-42249776161694Disease resistance RPP13-like protein 4
6j5u_A4e-42249776161694Disease resistance RPP13-like protein 4
6j5v_A4e-42249776161694Disease resistance RPP13-like protein 4
6j5w_A4e-42249776161694Disease resistance RPP13-like protein 4
6j6i_C4e-42249776161694Disease resistance RPP13-like protein 4
6j6i_F4e-42249776161694Disease resistance RPP13-like protein 4
6j6i_G4e-42249776161694Disease resistance RPP13-like protein 4
6j6i_L4e-42249776161694Disease resistance RPP13-like protein 4
6j6i_O4e-42249776161694Disease resistance RPP13-like protein 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105DRRRKW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G19510.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698060.10.0PREDICTED: putative disease resistance RPP13-like protein 2 isoform X1
RefseqXP_015698061.10.0PREDICTED: putative disease resistance RPP13-like protein 2 isoform X1
RefseqXP_015698062.10.0PREDICTED: putative disease resistance RPP13-like protein 2 isoform X2
TrEMBLA0A0D9XVF10.0A0A0D9XVF1_9ORYZ; Uncharacterized protein
STRINGLPERR11G19510.30.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.23e-23WRKY DNA-binding protein 26