PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G19510.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 1262aa    MW: 142711 Da    PI: 7.5033
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G19510.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.97.2e-1710751128151
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEE CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveit 51  
                       +dDg++W KYG K++ g++++rsY++Ct++   gC ++k+v+ ++ dp ++++ 
  LPERR11G19510.2 1075 VDDGFSWIKYGEKDILGAKYTRSYFQCTHReskGCLATKQVQPTDGDPLILDTL 1128
                       59***************************99999*************9998876 PP
2WRKY64.12.4e-2011441201159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59  
                       ldDg++WrKYGqK+++gs +pr  +r + +gC+++k+v r+++dp++++++Y+g+H+++
  LPERR11G19510.2 1144 LDDGHSWRKYGQKDIQGSMHPRCTHRNS-QGCQATKQVHRNDDDPQLFDVVYHGDHTCH 1201
                       58*******************9666643.59**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147983.01E-92106No hitNo description
SuperFamilySSF525406.14E-56245507IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.9E-54253533IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3008.9E-14257392IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.8E-17272287No hitNo description
PRINTSPR003641.8E-17344358No hitNo description
PRINTSPR003641.8E-17441455No hitNo description
SuperFamilySSF520582.72E-23572969IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.107.6E-16644968IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.8E-17795811No hitNo description
PROSITE profilePS5081115.27310701122IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-1510701128IPR003657WRKY domain
SuperFamilySSF1182902.75E-1510731128IPR003657WRKY domain
SMARTSM007744.1E-2010751128IPR003657WRKY domain
PfamPF031063.3E-1510761128IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.7E-2211311202IPR003657WRKY domain
PROSITE profilePS5081118.72811391198IPR003657WRKY domain
SuperFamilySSF1182901.23E-1811401202IPR003657WRKY domain
SMARTSM007742.9E-3111441202IPR003657WRKY domain
PfamPF031061.0E-1911451201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1262 aa     Download sequence    Send to blast
MEGAMFSLPA RLDGLLLPLH GSILPKGAEE EIPLIKRDLD EIISILHGHK EAEEDHANDS  60
RIMWMCWMKE VRELSYDIED CIDQFEHAAA PRYRSRSLQQ DRRRKWLSRQ RGKKQMAPWV  120
PEKLKQRLWM ANKIREFSLR SQEAIQRYAM CKNLSGIGTD FTTRGDVSIT PCHPKRFNFK  180
EHADNVRLAD AQADIDAALK KVNNLKNLLP ADSAHIVADI EAALKASLKK LKQNMLPGTP  240
TSSTTRGHVG IDSSMSKLEN WLAVCGEEKL KVVSIVGVGG VGKTTLANEL YCKLRWQFEC  300
RAFVRTSKKP DIRRILISML SQVRPHQPPD NWKVHDLISS IRTHLQDKRY LIIIDDLWAT  360
STWDIIKCTL PDGNSCSRIL ITTEIEDLAL QFCSYDSKNI FKMKPLGEDD SRTLFFSSVF  420
GSHSNCPPEL SEASYDIVRK CGGLPLAIVT IAGLLVSKLQ KQEQWDCINK SLGYSLMANP  480
NLEGMKQLLN FCYNNLPQHL RACMLYLSMY QEDTIIWKDD LVNQWIAEGF ICAIEVHNKE  540
EILSTYFDEL LGRKIVQPVH INDNGEVLSC VVHHMVLNFI THKSIEENFI VAIDHSQATT  600
RLADKVRRLS FHFGHAEDET PTNMRLSQVR TLALFGVLNL MSFITGFRLL KVLILHFWGD  660
EDSISFDLTK VSELALLRYL KVTSNVTLKL PMRMQGLQYL ETLKINGKIG AVPSDIVHLP  720
CLLHLSLPAK TNLPNGIVHM TSLRTLGYFD LSCNSTENLW SLGELINLQD LQLAYSAIQF  780
DNLNNNVQYL GSILGKLRNL KFITLSPTSS LYENTLHTNS GISVRISVDG WSSLSSPPAL  840
LQTFDLLPCV CIFSSLPNWI GQLRNLCILK IGIREVTNND VDVLGGLLAL TVLSLYVHTK  900
PAERIVFGNV GFSILKYFKF RCSLARIKFD AGTMPCLQKL KLDFNVHRAD QHDTIPIGIE  960
HLSRLEEISA KIRVACSADD LSKRFAESAL TNAIKMHSGC PRVNIRSVDW TFDGKDDISV  1020
GTREEEHRTL VRQDHTVKEG PNEISAGLQK HSVKDHIQLK TQPKERIQVR VSSMVDDGFS  1080
WIKYGEKDIL GAKYTRSYFQ CTHRESKGCL ATKQVQPTDG DPLILDTLMK KSTQVRVSSL  1140
YDALDDGHSW RKYGQKDIQG SMHPRCTHRN SQGCQATKQV HRNDDDPQLF DVVYHGDHTC  1200
HQMASFNLNE QTTWWSPSSA SLEQSQNLQS SSQLEEQGST VTCTVSTVNE EDDLLGGHIP  1260
LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C3e-42249776161694Disease resistance RPP13-like protein 4
6j5t_F3e-42249776161694Disease resistance RPP13-like protein 4
6j5t_G3e-42249776161694Disease resistance RPP13-like protein 4
6j5t_L3e-42249776161694Disease resistance RPP13-like protein 4
6j5t_O3e-42249776161694Disease resistance RPP13-like protein 4
6j5u_A3e-42249776161694Disease resistance RPP13-like protein 4
6j5v_A3e-42249776161694Disease resistance RPP13-like protein 4
6j5w_A3e-42249776161694Disease resistance RPP13-like protein 4
6j6i_C3e-42249776161694Disease resistance RPP13-like protein 4
6j6i_F3e-42249776161694Disease resistance RPP13-like protein 4
6j6i_G3e-42249776161694Disease resistance RPP13-like protein 4
6j6i_L3e-42249776161694Disease resistance RPP13-like protein 4
6j6i_O3e-42249776161694Disease resistance RPP13-like protein 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105DRRRKW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G19510.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698062.10.0PREDICTED: putative disease resistance RPP13-like protein 2 isoform X2
TrEMBLA0A0D9XVF00.0A0A0D9XVF0_9ORYZ; Uncharacterized protein
STRINGLPERR11G19510.30.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-20WRKY DNA-binding protein 46