PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G19410.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 1225aa MW: 138773 Da PI: 7.8434 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 71.5 | 1.2e-22 | 1000 | 1059 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDg++W KYGqK++ g+ +pr Y+rCt++ gC+++k+v+r+++d +v+++Y g H++ LPERR11G19410.2 1000 DDGFTWMKYGQKDIPGAMCPRTYFRCTHQsmkGCQATKHVQRTNDDLLLVDVVYYGAHTC 1059 8***************************99999*************************98 PP | |||||||
2 | WRKY | 81.1 | 1.2e-25 | 1135 | 1195 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ g+++p sYYrCt++ gC +kkkv+r++ dp ++++ Y+g H+++ LPERR11G19410.2 1135 LDDGYSWRKYGQKDILGAKYPISYYRCTHTfyGCGAKKKVQRTDGDPLLFDVEYKGVHTCH 1195 59****************************99**************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52540 | 5.88E-53 | 200 | 465 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 1.7E-13 | 210 | 380 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 1.2E-53 | 211 | 490 | IPR002182 | NB-ARC |
PRINTS | PR00364 | 1.3E-12 | 230 | 245 | No hit | No description |
PRINTS | PR00364 | 1.3E-12 | 302 | 316 | No hit | No description |
PRINTS | PR00364 | 1.3E-12 | 399 | 413 | No hit | No description |
SuperFamily | SSF52058 | 5.44E-23 | 530 | 928 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 7.1E-18 | 626 | 928 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:2.20.25.80 | 4.0E-22 | 995 | 1060 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.244 | 998 | 1057 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.22E-20 | 998 | 1060 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-31 | 999 | 1061 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-22 | 1000 | 1059 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-26 | 1120 | 1195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-23 | 1128 | 1195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.459 | 1130 | 1192 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-33 | 1135 | 1196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-23 | 1136 | 1195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1225 aa Download sequence Send to blast |
MVRRCWMKEV RELSYDIEDC IDHYEHATAA GSHSVPNISC RKLSRRPWNN TPLVPEKLKQ 60 RLWMANKIRE FSMRAQDALL RHTMYNNLSG ISSTAYTTRG DVCSNTPSHP TQFKVHVDNV 120 GSVGTDPDGM EAILMNELNK LKNLLAGIPT ASLMQFREHI NKVHVIHAHM EAILNNLENM 180 PPGITTASNS SRQPTKFQEH ANYVHHVGID AAMNKIQNWL TVCGEEKLKV VSIMGVGGIG 240 KTTLANELYR KLRWQFECRA FVRTSQKTDM RRLLVNILSQ VCPHQRPDNW KVHSLISSIR 300 THLQDKRYLI IVEDLWATST WDIIKCALPE SNSSSRILTT TEIEDLALQS CSYDSKYIFK 360 MKPLCEDDSR NLFFSTVFGS RSNCPAELSE ASYDIVRKCG GLPLAVVTIA GLLASQLEKQ 420 EQWDYINKTL GHSLMANPNL EGMKQLLSLC HNNLPQHLKA CMLYLSMYQE DFVIWKDDLV 480 NQWIAEGFIC AIGGDDKEEI SKAYVDELVG RKLIQPVLIN DNDEVLSCVV HRVVLNFITC 540 KSIEENFIIA IDHSLETTRF ADKVRRLSIH FGSVENATPP TNMRLSQVRT VAFWGVLNYM 600 PFIMEFRLLK VLALHFLGDE DGIISFDLTK ILGLVRLRYL KVSTNVTLKL PTQIQGLQYL 660 ETLKIDGKIE AVPSDIIYLP GLLHLSLPAK TNLPNGIAHM ALLRTLGYFD LSCNSAENLW 720 SLGGLTNLRD LQLVCSDIHS DNLKNNIKYL GSILGKLRNL KSITLSLGGY SYVNTPHKDN 780 ATSMRIFVGG WSNMSSVPAF LERFEFLPCV CIFSSRPNWI GQLGNLCILK IGIREVTSCD 840 VDVLGGLLAL TVLSLHVHTK PAESIVFGNI GFSILKYFKF RCCVAWMKFE VGAMPNLQKL 900 KLDFNVHRAD RLDTIPVGIE HVSRLEEISA KIRVSCAADD FSKRFAESAL TKAIRMHPGR 960 PSVNIRCVDW TFDGEDDDNV GIRKKLPREK RQVRMNCMED DGFTWMKYGQ KDIPGAMCPR 1020 TYFRCTHQSM KGCQATKHVQ RTNDDLLLVD VVYYGAHTCG DIAHSDNQMS LRSAEIHSSN 1080 LQEIQESPDL WLNGPEQSTI YNDDDLPHHN KQPEKTVEKR TTQVRVSSMQ DIAPLDDGYS 1140 WRKYGQKDIL GAKYPISYYR CTHTFYGCGA KKKVQRTDGD PLLFDVEYKG VHTCHDKAHV 1200 SPRRPSPPQS TTCRVPHPKD DDNDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j5t_C | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j5t_F | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j5t_G | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j5t_L | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j5t_O | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j5u_A | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j5v_A | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j5w_A | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j6i_C | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j6i_F | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j6i_G | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j6i_L | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
6j6i_O | 2e-41 | 150 | 733 | 112 | 691 | Disease resistance RPP13-like protein 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G19410.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025877420.1 | 0.0 | disease resistance protein RGA5-like isoform X5 | ||||
TrEMBL | A0A0D9XVD4 | 0.0 | A0A0D9XVD4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G19410.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07100.2 | 4e-27 | WRKY DNA-binding protein 26 |