PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G19410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 1225aa    MW: 138773 Da    PI: 7.8434
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G19410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.51.2e-2210001059258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58  
                       dDg++W KYGqK++ g+ +pr Y+rCt++   gC+++k+v+r+++d  +v+++Y g H++
  LPERR11G19410.1 1000 DDGFTWMKYGQKDIPGAMCPRTYFRCTHQsmkGCQATKHVQRTNDDLLLVDVVYYGAHTC 1059
                       8***************************99999*************************98 PP
2WRKY81.11.2e-2511351195159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59  
                       ldDgy+WrKYGqK++ g+++p sYYrCt++  gC +kkkv+r++ dp ++++ Y+g H+++
  LPERR11G19410.1 1135 LDDGYSWRKYGQKDILGAKYPISYYRCTHTfyGCGAKKKVQRTDGDPLLFDVEYKGVHTCH 1195
                       59****************************99**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525405.88E-53200465IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.7E-13210380IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.2E-53211490IPR002182NB-ARC
PRINTSPR003641.3E-12230245No hitNo description
PRINTSPR003641.3E-12302316No hitNo description
PRINTSPR003641.3E-12399413No hitNo description
SuperFamilySSF520585.44E-23530928IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.107.1E-18626928IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.804.0E-229951060IPR003657WRKY domain
PROSITE profilePS5081119.2449981057IPR003657WRKY domain
SuperFamilySSF1182901.22E-209981060IPR003657WRKY domain
SMARTSM007744.1E-319991061IPR003657WRKY domain
PfamPF031066.0E-2210001059IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-2611201195IPR003657WRKY domain
SuperFamilySSF1182901.14E-2311281195IPR003657WRKY domain
PROSITE profilePS5081121.45911301192IPR003657WRKY domain
SMARTSM007743.9E-3311351196IPR003657WRKY domain
PfamPF031062.5E-2311361195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1225 aa     Download sequence    Send to blast
MVRRCWMKEV RELSYDIEDC IDHYEHATAA GSHSVPNISC RKLSRRPWNN TPLVPEKLKQ  60
RLWMANKIRE FSMRAQDALL RHTMYNNLSG ISSTAYTTRG DVCSNTPSHP TQFKVHVDNV  120
GSVGTDPDGM EAILMNELNK LKNLLAGIPT ASLMQFREHI NKVHVIHAHM EAILNNLENM  180
PPGITTASNS SRQPTKFQEH ANYVHHVGID AAMNKIQNWL TVCGEEKLKV VSIMGVGGIG  240
KTTLANELYR KLRWQFECRA FVRTSQKTDM RRLLVNILSQ VCPHQRPDNW KVHSLISSIR  300
THLQDKRYLI IVEDLWATST WDIIKCALPE SNSSSRILTT TEIEDLALQS CSYDSKYIFK  360
MKPLCEDDSR NLFFSTVFGS RSNCPAELSE ASYDIVRKCG GLPLAVVTIA GLLASQLEKQ  420
EQWDYINKTL GHSLMANPNL EGMKQLLSLC HNNLPQHLKA CMLYLSMYQE DFVIWKDDLV  480
NQWIAEGFIC AIGGDDKEEI SKAYVDELVG RKLIQPVLIN DNDEVLSCVV HRVVLNFITC  540
KSIEENFIIA IDHSLETTRF ADKVRRLSIH FGSVENATPP TNMRLSQVRT VAFWGVLNYM  600
PFIMEFRLLK VLALHFLGDE DGIISFDLTK ILGLVRLRYL KVSTNVTLKL PTQIQGLQYL  660
ETLKIDGKIE AVPSDIIYLP GLLHLSLPAK TNLPNGIAHM ALLRTLGYFD LSCNSAENLW  720
SLGGLTNLRD LQLVCSDIHS DNLKNNIKYL GSILGKLRNL KSITLSLGGY SYVNTPHKDN  780
ATSMRIFVGG WSNMSSVPAF LERFEFLPCV CIFSSRPNWI GQLGNLCILK IGIREVTSCD  840
VDVLGGLLAL TVLSLHVHTK PAESIVFGNI GFSILKYFKF RCCVAWMKFE VGAMPNLQKL  900
KLDFNVHRAD RLDTIPVGIE HVSRLEEISA KIRVSCAADD FSKRFAESAL TKAIRMHPGR  960
PSVNIRCVDW TFDGEDDDNV GIRKKLPREK RQVRMNCMED DGFTWMKYGQ KDIPGAMCPR  1020
TYFRCTHQSM KGCQATKHVQ RTNDDLLLVD VVYYGAHTCG DIAHSDNQMS LRSAEIHSSN  1080
LQEIQESPDL WLNGPEQSTI YNDDDLPHHN KQPEKTVEKR TTQVRVSSMQ DIAPLDDGYS  1140
WRKYGQKDIL GAKYPISYYR CTHTFYGCGA KKKVQRTDGD PLLFDVEYKG VHTCHDKAHV  1200
SPRRPSPPQS TTCRVPHPKD DDNDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-41150733112691Disease resistance RPP13-like protein 4
6j5t_F2e-41150733112691Disease resistance RPP13-like protein 4
6j5t_G2e-41150733112691Disease resistance RPP13-like protein 4
6j5t_L2e-41150733112691Disease resistance RPP13-like protein 4
6j5t_O2e-41150733112691Disease resistance RPP13-like protein 4
6j5u_A2e-41150733112691Disease resistance RPP13-like protein 4
6j5v_A2e-41150733112691Disease resistance RPP13-like protein 4
6j5w_A2e-41150733112691Disease resistance RPP13-like protein 4
6j6i_C2e-41150733112691Disease resistance RPP13-like protein 4
6j6i_F2e-41150733112691Disease resistance RPP13-like protein 4
6j6i_G2e-41150733112691Disease resistance RPP13-like protein 4
6j6i_L2e-41150733112691Disease resistance RPP13-like protein 4
6j6i_O2e-41150733112691Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G19410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877420.10.0disease resistance protein RGA5-like isoform X5
TrEMBLA0A0D9XVD40.0A0A0D9XVD4_9ORYZ; Uncharacterized protein
STRINGLPERR11G19410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.24e-27WRKY DNA-binding protein 26