PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G15450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 95aa MW: 10226.5 Da PI: 4.616 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.3e-08 | 17 | 57 | 15 | 54 |
HHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +i + +++L+ +lP+ + ++K s ++L++A++YI+sL LPERR11G15450.1 17 QIAELISKLQAVLPTgN-DDANGKeTSAGDVLQEACRYIRSL 57 79999**********66.6666776***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.756 | 2 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-8 | 16 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 17 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-8 | 17 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MSSSRRSRTS AAATDEQIAE LISKLQAVLP TGNDDANGKE TSAGDVLQEA CRYIRSLHRE 60 ADALSEKLAE LLLQPSDRAI NGADASDLIR TLLLM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G15450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616700.1 | 4e-36 | transcription factor ILI2 isoform X1 | ||||
Swissprot | B8BLA3 | 4e-37 | ILI2_ORYSI; Transcription factor ILI2 | ||||
Swissprot | Q2R1J3 | 4e-37 | ILI2_ORYSJ; Transcription factor ILI2 | ||||
TrEMBL | A0A0D9XTX3 | 5e-60 | A0A0D9XTX3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G15450.1 | 8e-61 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17004 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 1e-16 | bHLH family protein |
Publications ? help Back to Top | |||
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