PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G15400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 349aa    MW: 38138.5 Da    PI: 10.124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G15400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.9e-06117164152
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                      +++ + erE+  Rd++N+ f eL ++l +      +   Ka++L  A + ++
  LPERR11G15400.1 117 KKTHKAEREKLKRDQLNDLFVELSSMLEPE----RQNSGKATVLGDAARVLR 164
                      678899*********************996....344445666666666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.2E-8114186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.97E-4114171No hitNo description
SuperFamilySSF474599.03E-11114180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.001116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0012122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MATSSGSVWA SPSIRRRRHV SPGSHKCADP ALRERFRLCR GGRPALTSVL GSDPRKDLGV  60
QVNPHAQREV GQLLWNQNLS MVADTESSGS LGGSSNAASD KAVDGSLDKR SQEKAPKKTH  120
KAEREKLKRD QLNDLFVELS SMLEPERQNS GKATVLGDAA RVLRDLLSQV ESLRKEQSAL  180
LTERQYVGSE KNELQEENIM LRAQILELHN ELCARMGNNN LNQSNLAMSQ PVANNGNNSA  240
TRPVPHHIWS NGPNLSNMAM THQTNTLSPL HNQHHQSTDV SPVHASRPQE LQLFPGTSVS  300
TEREQYRVGS TPATSSGLTD SLSGQLRLSL LQSSQEESSG GSKKGRKKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G15400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680170.0AK068017.1 Oryza sativa Japonica Group cDNA clone:J013132D22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617819.11e-164transcription factor BHLH062-like isoform X1
TrEMBLA0A0D9XTW20.0A0A0D9XTW2_9ORYZ; Uncharacterized protein
STRINGLPERR11G15400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129592124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.39e-32bHLH family protein