PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G13310.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GRF | ||||||||
Protein Properties | Length: 381aa MW: 41698.5 Da PI: 9.2447 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.1 | 6.5e-23 | 135 | 178 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ep+rCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e LPERR11G13310.2 135 VEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEG 178 59***************************************996 PP | |||||||
2 | QLQ | 58.3 | 2.3e-20 | 82 | 118 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++aan+ vP+ Ll++i++ LPERR11G13310.2 82 GPFTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRR 118 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.4E-12 | 82 | 118 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.0E-14 | 83 | 117 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.888 | 83 | 118 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.136 | 134 | 178 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.2E-19 | 136 | 177 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MLSSYCGGNG RCDEQGGQQQ DGFLVREARA SPPPHPSSSS FLGSTRSSGR GGQMLSFSPN 60 ETAGFGLSSG GSMQGVLARV RGPFTPTQWM ELEHQALIYK HIAANVSVPS SLLLPIRRSL 120 HPWGWGSFPP GCADVEPRRC RRTDGKKWRC SRDAVGDQKY CERHINRGRH RSRKHVEGRK 180 ATLTIAEPPM VIASGVSSRS YNVARQKQVK TSATNVTDPF SRQSNRKFLE KQNAVDQLSP 240 MDSFDFSSTQ SSPNYDNVAL SPLNLHHDHD ESYIGQGAAS SSEKGNMLHE SRLTVSKETL 300 DDGPLGEVFK RKNCELSSAN ILNDKWTEGP NSHCPAGILQ MATKFNSMSS SNTVNGGGTA 360 LENRITDNGY LMYPHIVSTL L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G13310.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103055 | 0.0 | AK103055.1 Oryza sativa Japonica Group cDNA clone:J033117J15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615703.1 | 0.0 | growth-regulating factor 8 | ||||
Swissprot | Q6AWY1 | 0.0 | GRF8_ORYSJ; Growth-regulating factor 8 | ||||
TrEMBL | A0A0D9XT21 | 0.0 | A0A0D9XT21_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G13310.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-37 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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