PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G11360.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 362aa    MW: 41146.3 Da    PI: 9.3785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G11360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041169191223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ C ++++++ +L  Hi+  H
  LPERR11G11360.1 169 SCSVCWRVYPTSRLLSIHISEaH 191
                      6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.7141166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143166IPR007087Zinc finger, C2H2
SMARTSM003557.4168191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170191IPR007087Zinc finger, C2H2
SMARTSM003550.47206231IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280208231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDSAQNTTRT RRRVRPSSRL RLSPIDSSPT PSEFESPFPL SLSLSARSIE AGRPATGSER  60
RMQQKPAAEA MDEEVKGAAA AAGRAGLGFW LAARRRLAPD DPFFAAGDME RELLAKQVAL  120
DLSEDERYQL EKMEMTSANN LFCPISGCGA HLDCLENFED HYNTRHTASC SVCWRVYPTS  180
RLLSIHISEA HDSFFQAKVA RGFPMYECVV EGCGVKLKSY KSRQQHLVDK HQFPKSFEFF  240
KKARPSQRHR HKTQKQRQTV YKGEETRETL MDVDGKSSRN MNQKYRPKQH DDKESKENDC  300
EEPKNNEMEV DKQIDELASA VSKLSTADST PSISFGHRRT RGLAFVPRSI RQNKQVSQKE  360
PK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G11360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607020.0AK060702.1 Oryza sativa Japonica Group cDNA clone:001-030-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615475.10.0zinc finger protein 511 isoform X2
TrEMBLA0A0D9XSB00.0A0A0D9XSB0_9ORYZ; Uncharacterized protein
STRINGLPERR11G11360.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-87zinc ion binding;nucleic acid binding;zinc ion binding