PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G09100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 504aa    MW: 55131.7 Da    PI: 6.7644
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G09100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55.2e-1188144155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  LPERR11G09100.1  88 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 144
                      57*******************4444.2455535555.779999**************98 PP
2AP246.59.4e-15189238355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  LPERR11G09100.1 189 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 238
                      9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-1488154IPR016177DNA-binding domain
PfamPF008472.3E-888144IPR001471AP2/ERF domain
CDDcd000181.59E-1888154No hitNo description
SMARTSM003805.7E-2389158IPR001471AP2/ERF domain
PROSITE profilePS5103217.12289152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1189153IPR001471AP2/ERF domain
PRINTSPR003672.2E-690101IPR001471AP2/ERF domain
CDDcd000181.49E-23187248No hitNo description
SuperFamilySSF541717.85E-18187248IPR016177DNA-binding domain
SMARTSM003807.1E-33188252IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-18188247IPR001471AP2/ERF domain
PROSITE profilePS5103219.203188246IPR001471AP2/ERF domain
PfamPF008471.3E-9189238IPR001471AP2/ERF domain
PRINTSPR003672.2E-6228248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MQQPETAAAA GNGRGGSSVG LSMIKNWLRS QSAPAPAAAG DAMALVPVST SPAVEATTVA  60
DGIGKGIDGA ASAQRMKTAM DTFGQRTSIY RGVTKHRWTG RYEAHLWDNS CRREGQTRKG  120
RQGGYDKEEK AARAYDLAAL KYWGTTTTTN FPVSNYEKEL EDMKHMSRQE YVASLRRKSS  180
GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN  240
AVTNFDMSRY DVKSIIESSN LPIGSGSTTR RMKDSSYHND NVMDINVNTD ANNVESSQFT  300
NGIGNYSSQH YGYNGWSPIS TQPIPLQYAS GQSMAWCKQE ESSVVAAAQN LHSLHHFSSL  360
GYTHNFFQQS EVPDVTGFVD APLRSEDSYS FKYNGTQDFH ELPGGVSYAM PVATVVDQQV  420
QGIHGYRDDG MVSIGTTHDL YGSRNVYYLS EGSLAADAGK DGHYGEAVVG NNWVSQTPES  480
DIVEKADNVT VCHGLPLFSV WNDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G09100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876947.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8L3U31e-124BBM1_BRANA; AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A0D9XRG70.0A0A0D9XRG7_9ORYZ; Uncharacterized protein
STRINGLPERR11G09100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-117AP2 family protein