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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G07100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22288.8 Da PI: 4.6757 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.4e-18 | 14 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+Wv+eIr+p gk++r++lg+f ++e+Aa a++ a+++l+g LPERR11G07100.1 14 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 63 69****999.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.88E-28 | 13 | 71 | No hit | No description |
Pfam | PF00847 | 8.4E-12 | 14 | 63 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 14 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-37 | 14 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.67 | 14 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-22 | 14 | 72 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-12 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-12 | 53 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MEINGGGGEM AAAQYRGVRK RKWGKWVSEI REPGKKTRIW LGSFESPEMA AVAHDVAALR 60 LRGRDARLNF PSLVHRFRRP ATAHPDDVRA AALEAASQFR RSAPDLLLDS AASAAGVSDC 120 GGFEFHDSGG LIGGDDVAAA WDWGDLVGGE EELEARSPKM WAELAEAMLM APPVWEGGEA 180 AEENDEWAHA SSALWDYSYS QPFGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 14 | 75 | 5 | 67 | ATERF1 |
3gcc_A | 1e-16 | 14 | 75 | 5 | 67 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G07100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828349.1 | 3e-68 | ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | A0A0D9XQQ4 | 1e-144 | A0A0D9XQQ4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G07100.1 | 1e-145 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 7e-29 | ERF family protein |