PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

LPERR11G04100.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

TCP

Protein Properties

Length: 378aa MW: 38646.6 Da PI: 8.0741

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR11G04100.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.7	2e-42	95	233	2	125
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +ss+++ s ++a +s LPERR11G04100.1 95 PAAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSSSAAASPRAAPPSF 188 6789*****************************************************************9997777777777655555555555 PP TCP 95 akskksqksaasalnlakesr..............akarararer 125 +++ + + aa++l + ++++ a + +r+r+r LPERR11G04100.1 189 HHQFQHDVAAAAMLGFPHHHHhhllaqppphqdpgAGEFMRKRYR 233 566666666677999999777577777777777775555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.349	101	155	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.4E-37	101	196	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEQQAAGGAA PSSSTSNSTN SSRSTSDHHA AAAAQHHHHA FYYAGAPAAG ATMPAPASFM 60 GSLAMVPSSA PAPAAAQVQA VEPESQKKAA LVAAPAAKRP TKDRHTKVEG RGRRIRMPAL 120 CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV SLRSSSAAAS 180 PRAAPPSFHH QFQHDVAAAA MLGFPHHHHH HLLAQPPPHQ DPGAGEFMRK RYREGGADDL 240 FKDNAAAASR HEDTDGGGGG ENEQKARAAA APPASPMWAV GPNTGGGGGG GAAFWMQPAW 300 AFAGGGNTVQ APLQFMTRSA FAGAVTMADN NNNSSSSNLG MLAALNAGGE QQQEGQPPEM 360 DHHRRANGGG GGGAASPQ

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEQQAAGGAA PSSSTSNSTN SSRSTSDHHA AAAAQHHHHA FYYAGAPAAG ATMPAPASFM  60
GSLAMVPSSA PAPAAAQVQA VEPESQKKAA LVAAPAAKRP TKDRHTKVEG RGRRIRMPAL  120
CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV SLRSSSAAAS  180
PRAAPPSFHH QFQHDVAAAA MLGFPHHHHH HLLAQPPPHQ DPGAGEFMRK RYREGGADDL  240
FKDNAAAASR HEDTDGGGGG ENEQKARAAA APPASPMWAV GPNTGGGGGG GAAFWMQPAW  300
AFAGGGNTVQ APLQFMTRSA FAGAVTMADN NNNSSSSNLG MLAALNAGGE QQQEGQPPEM  360
DHHRRANGGG GGGAASPQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR11G04100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616519.1	1e-102	transcription factor PCF3
Swissprot	Q53PH2	1e-103	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A0D9XPL8	0.0	A0A0D9XPL8_9ORYZ; Uncharacterized protein
STRING	LPERR11G04100.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	9e-39	TCP family protein