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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G03780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 400aa MW: 42295.8 Da PI: 8.8816 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.9 | 4.3e-06 | 165 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+dC+++F +++L+ H +t H LPERR11G03780.1 165 FSCSDCDEVFVKPDSLELHRSTrH 188 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.473 | 165 | 193 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 167 | 188 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.59E-17 | 190 | 399 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 5.9E-9 | 192 | 398 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MGFYSSSSCK NRSQPMAAAA EGKNGGKKKK SSISRSITCA GSICSTKESS VSSRGRERRR 60 RSSSSSSITG GGGGGSTSSR SLMPPDHGDS AAAVSASSSF NSVMTSATSS STATTATSPP 120 SAMSSPLSSI GGSFRAMQIR KLSGCYVQCH SVLDPRSLAA AFAVFSCSDC DEVFVKPDSL 180 ELHRSTRHAV SELGADDTSR NIVEIIFQSS WLKKNGPVCK IDRILKVHSS DKIIKKFEQY 240 KELVKEKASS DDQVKKNPRC VADGNELLRF HCTTFSCSLG LAGGTALCSG STSSSSHCKL 300 CAIIKDGFRV DGNGRIATMA TSGRAHDMAE VLSDGEKRAM LVCRVVAGRV KKVISNSSSQ 360 ELDCDSVSPC SEGIYSDLDE LFVFSPRAIL PCFVVIYSGY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G03780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662766.1 | 0.0 | PREDICTED: uncharacterized protein LOC102705571 | ||||
TrEMBL | A0A0D9XPH5 | 0.0 | A0A0D9XPH5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G03780.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 2e-81 | C2H2-like zinc finger protein |