PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G03530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 436aa    MW: 49810.6 Da    PI: 6.5475
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G03530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.12.1e-27116212186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++m+e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d
  LPERR11G03530.1 116 KWTDSMVKLLITAVSYMGEDPGADLgggrrnfsimQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHALLD 209
                      7*********************9744456677788**********************************************55*********** PP

         trihelix  84 qle 86 
                      +++
  LPERR11G03530.1 210 RMD 212
                      *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0083113185IPR001005SANT/Myb domain
PfamPF138373.6E-20114237No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEGSNQPPRN TMQGHPYGSL DFHGVPVQMH PPNSGKQVFN QPQIPGNFTI SVDRITEPDN  60
ISDGVQLGQH GKIAHHHHKH HSKNHGSDEE DHDMNEDAPD THSGKDKKGS AWHRMKWTDS  120
MVKLLITAVS YMGEDPGADL GGGRRNFSIM QKKGKWKAIS KVMGERGCHV SPQQCEDKFN  180
DLNKRYKRLT DILGRGTACN VVENHALLDR MDISDKMKED ARKILSSKHL FYEEMCSYHN  240
NNRISLPEDP ALQQSLLLAL RCKEDNDFRR DASGDAEQDD DHSEDSDYEE NGEDHQAIDT  300
NIRGPSMHKR PWYMVDDVGF VTSCSNDGSG RSDPYNAVLD INKAFADGTD LALVQKDLAL  360
KSHEIQKHRL QIEVKAVRLA KQRLRWEKFR KNKDRELEMM ALENEQMMLE NKRFELDLRS  420
KELELEVKIK GNDNRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G03530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205330.0AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBankAK1011540.0AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615140.10.0uncharacterized protein LOC4349866 isoform X1
RefseqXP_015615141.10.0uncharacterized protein LOC4349866 isoform X1
RefseqXP_015615142.10.0uncharacterized protein LOC4349866 isoform X2
TrEMBLA0A0D9XPE60.0A0A0D9XPE6_9ORYZ; Uncharacterized protein
STRINGLPERR11G03530.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-91sequence-specific DNA binding transcription factors