PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G03390.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 810aa    MW: 89263.3 Da    PI: 5.9618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G03390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.5e-10160218563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr++r   NR +A rs +RK +++ eLe+kv++L++e ++L  +l  l+   + l++e+
  LPERR11G03390.1 160 KRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSTQLTLLQRDTSGLTAEN 218
                      9*********************************************9999888887776 PP
2GRAS100.23e-313445092170
             GRAS   2 velLlecAeavssgdlelaqalLarlsel......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                       +lLl+ Aeav++gd  la+ + +rl +        + +++++ Rla +f ++L++r+++ ++++y+    ++ +    s ++ ++++ +e+sP
  LPERR11G03390.1 344 SDLLLAGAEAVEAGDPILASVVFSRLDDFllsqipENAAASSFDRLAYHFDQGLRSRVSSACTGCYQP---EPPP----SGNMVVHQIIQELSP 430
                      679**********************9765444334455568*******************99999954...4443....3345677999***** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerL.akfAe 170
                      ++kf+h+t+NqaIl+a+ g+  vH++D++i++G+QW +++  La R +   s+ +T++ +  ++ k++++ t+ rL ++fA+
  LPERR11G03390.1 431 FVKFAHFTTNQAILDATVGDMDVHVVDLNIGEGIQWSSFMSDLARRGG--KSFILTAIMA-YADCKDSTHDTAVRLlSEFAS 509
                      *********************************************955..58999***99.556788888887775267775 PP
3GRAS71.91.2e-22510658226373
             GRAS 226 evLklvkslsPkvvvvveqeadh.nse......sFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhe 310
                       +L +vk+l+Pk+vv+ve ++ + +++      sF++ f+eal+++++lf+s+ + ++  +     + vE el+g++i++ v    + r+e + 
  LPERR11G03390.1 510 VLLGCVKKLQPKLVVIVEDDLVRiGRGappssaSFVDFFFEALHHFTMLFESFLSCFSYGNyeACVRLVETELVGPRIQDFVGEYRSVRIETNA 603
                      6899****************5443433445555********************777676664477899**************999998777776 PP

             GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                  GFk+ +ls  + +qa++l+  ++ + + v  e+g l l+Wk+rpL+svS+W
  LPERR11G03390.1 604 -------CKVLEGFKACELSACNIAQARMLVGLFN-RVFGVVFEKGRLALCWKSRPLISVSVW 658
                      .......33467***********************.77************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-15156220IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.036158221IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-10160211No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-10160214No hitNo description
PfamPF001708.6E-9160217IPR004827Basic-leucine zipper domain
CDDcd147031.17E-17161197No hitNo description
PROSITE profilePS5098517.821317513IPR005202Transcription factor GRAS
PfamPF035141.0E-28344509IPR005202Transcription factor GRAS
PfamPF035144.2E-20510658IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MDPRFPPPSA RGHHRRAHSE TFIRLPDADL LLDPDGDFGF SDLDFPSLSD DSPAASDPTP  60
PPLPPLQQQQ SSSSAAPPPP RPVPGGGGGG GGHLRSLSLD AAFFDGLSFQ GGGGGGIGHK  120
RSGSMDGESS LFEGESAPPD YAKKAMPADR LAELSLLDPK RAKRILANRQ SAARSKERKI  180
KYTSELERKV QTLQTEATTL STQLTLLQRD TSGLTAENRE LKLRLQSMEE QAKLRDALND  240
ALREEVQRLK IAAGQVPNMN GSSFNGVQQQ QQMPSYFSQP QQMHYLSGHQ GRQHHPNNPH  300
NSFNGGQSMS GQTLNDSMDF IILGQENGNL VAIQEELMEE NSLSDLLLAG AEAVEAGDPI  360
LASVVFSRLD DFLLSQIPEN AAASSFDRLA YHFDQGLRSR VSSACTGCYQ PEPPPSGNMV  420
VHQIIQELSP FVKFAHFTTN QAILDATVGD MDVHVVDLNI GEGIQWSSFM SDLARRGGKS  480
FILTAIMAYA DCKDSTHDTA VRLLSEFASV LLGCVKKLQP KLVVIVEDDL VRIGRGAPPS  540
SASFVDFFFE ALHHFTMLFE SFLSCFSYGN YEACVRLVET ELVGPRIQDF VGEYRSVRIE  600
TNACKVLEGF KACELSACNI AQARMLVGLF NRVFGVVFEK GRLALCWKSR PLISVSVWAP  660
DDRRRLEHIL LRMHSVVEEA EGCHITNPGM LLLQGFIEGF YLGYYMLDEI KFQPPEEESI  720
KDEGDTSRAQ TSRRISAAKD SGRSSTQHEW KLLQRRSTAA ADAVYFSQPQ QMHYLSDHQG  780
RHHHPNNPHN SFNGGQSMNG QALNDSMDFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2538466054380Protein SCARECROW
5b3h_A2e-2538466053379Protein SCARECROW
5b3h_D2e-2538466053379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G03390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8285020.0CT828502.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA011L18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XPC30.0A0A0D9XPC3_9ORYZ; Uncharacterized protein
STRINGLPERR11G03390.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.16e-44VIRE2-interacting protein 1