PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR11G03270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 903aa MW: 98376.9 Da PI: 6.5635 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00074 | 708 | 745 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a K s + Lek+v+++ Lq LPERR11G03270.1 708 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 745 67799************66......999999********99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.1E-32 | 5 | 165 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 10.525 | 695 | 744 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-4 | 708 | 757 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010078 | Biological Process | maintenance of root meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010479 | Biological Process | stele development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 903 aa Download sequence Send to blast |
MAVGEALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHISCPAGSE DSEALSTDVA 60 CAAATASADT VTICSLVKKV MASQVHVVGE GTVGRAAFTG NHQWIIHGTA NDHGLPSEVA 120 AEMINQFKLG IQTIAIIPVL PRGVLQLGST GVVMENKSFM THARKLCSQL NNRSSMAVSS 180 VKNASSQQGR SRPLHGASNV KPTENCSKGF SQFPMTSEQY KHLDTMAVSV STSLDACMNA 240 SSLKIEQVNG HAVREHVVFS KPDVRFIQQA YRESQHGSNT QNTGMSSDLI TSSLTSVQKK 300 SLLMNNIGQL EFGDSADTPA DLHRNVLLKP LVYLDPFIHE NRNINISRGM AEASNGINDH 360 GNFDFLAGGA RVVRANFCTS ATSQVSNRSN SVSGMLLHRQ PLVSYELSQP SEYSMKIGNL 420 ERESSHIPSV LSSESDVQIS NGLNTGVSQE NQPNVSKHFC QDQKINRVND LSATLSTERT 480 NTMHGCKPPG LSVEKVSPLF VEQSVENDLF DILGPQFHHL CHNVGADLVP WTDSKSQSSD 540 RDVPESLIHV DSSLLTSSRD NDLYSGIFSL TDTDQLLDAV ISNVNLAGKQ NSDDSASCKT 600 SLTDIPSSCF PSLKDMKQCG SSGIPSGLIK HESAQFIKQP CTDSAEDGCL SQNNGMHKSQ 660 IRLWIESGQN MKCESTSASN SKGLDTPSKA NRKRSRPGES PRPRPKDRQL IQDRIKELRE 720 MVPNGAKCSI DALLEKTVKH MLFLQSVTKH ADKLKDSTES KILGSENGPV WKDYFEGGAT 780 WAFDVGSQSM TCPIIVEDLD RPRQMLVEMI CEDRGIFLEI ADFIKGLGLT ILRGAMEARK 840 SKIWARFTVE ANRDVTRMEI FLSLVRLLEP NSDSSGAADN ANNVNMPFGL VHQPVIPATG 900 RIQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR11G03270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC133217 | 0.0 | AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662753.2 | 0.0 | PREDICTED: transcription factor LHW-like | ||||
TrEMBL | A0A0D9XPA3 | 0.0 | A0A0D9XPA3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G03270.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2654 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31280.1 | 5e-44 | conserved peptide upstream open reading frame 7 |