PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G03270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 903aa    MW: 98376.9 Da    PI: 6.5635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G03270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000747087451355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  LPERR11G03270.1 708 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 745
                      67799************66......999999********99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-325165IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.525695744IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-4708757IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MAVGEALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHISCPAGSE DSEALSTDVA  60
CAAATASADT VTICSLVKKV MASQVHVVGE GTVGRAAFTG NHQWIIHGTA NDHGLPSEVA  120
AEMINQFKLG IQTIAIIPVL PRGVLQLGST GVVMENKSFM THARKLCSQL NNRSSMAVSS  180
VKNASSQQGR SRPLHGASNV KPTENCSKGF SQFPMTSEQY KHLDTMAVSV STSLDACMNA  240
SSLKIEQVNG HAVREHVVFS KPDVRFIQQA YRESQHGSNT QNTGMSSDLI TSSLTSVQKK  300
SLLMNNIGQL EFGDSADTPA DLHRNVLLKP LVYLDPFIHE NRNINISRGM AEASNGINDH  360
GNFDFLAGGA RVVRANFCTS ATSQVSNRSN SVSGMLLHRQ PLVSYELSQP SEYSMKIGNL  420
ERESSHIPSV LSSESDVQIS NGLNTGVSQE NQPNVSKHFC QDQKINRVND LSATLSTERT  480
NTMHGCKPPG LSVEKVSPLF VEQSVENDLF DILGPQFHHL CHNVGADLVP WTDSKSQSSD  540
RDVPESLIHV DSSLLTSSRD NDLYSGIFSL TDTDQLLDAV ISNVNLAGKQ NSDDSASCKT  600
SLTDIPSSCF PSLKDMKQCG SSGIPSGLIK HESAQFIKQP CTDSAEDGCL SQNNGMHKSQ  660
IRLWIESGQN MKCESTSASN SKGLDTPSKA NRKRSRPGES PRPRPKDRQL IQDRIKELRE  720
MVPNGAKCSI DALLEKTVKH MLFLQSVTKH ADKLKDSTES KILGSENGPV WKDYFEGGAT  780
WAFDVGSQSM TCPIIVEDLD RPRQMLVEMI CEDRGIFLEI ADFIKGLGLT ILRGAMEARK  840
SKIWARFTVE ANRDVTRMEI FLSLVRLLEP NSDSSGAADN ANNVNMPFGL VHQPVIPATG  900
RIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G03270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332170.0AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662753.20.0PREDICTED: transcription factor LHW-like
TrEMBLA0A0D9XPA30.0A0A0D9XPA3_9ORYZ; Uncharacterized protein
STRINGLPERR11G03270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.15e-44conserved peptide upstream open reading frame 7