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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G02850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bZIP | ||||||||
Protein Properties | Length: 484aa MW: 53083.4 Da PI: 6.8283 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.8 | 8.2e-12 | 180 | 208 | 5 | 33 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le LPERR11G02850.1 180 KTMRRLAQNREAARKSRLRKKAYIQQLES 208 6679***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.8E-4 | 175 | 250 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.887 | 178 | 222 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.7E-7 | 178 | 216 | No hit | No description |
SuperFamily | SSF57959 | 4.38E-7 | 180 | 213 | No hit | No description |
Pfam | PF00170 | 6.7E-9 | 180 | 209 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 3.29E-20 | 180 | 231 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 183 | 198 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.0E-28 | 259 | 333 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MGEASSSSGH SRQSPHVLGY GFHGTMPNSM PSANFFEQGG ATYFGELEEA LMQQVATLRR 60 TQQTATTTST LHHGDTTPFS TAATATVTTA RPPPTLDIFP SWPMRSLHTP KEGSNLTADT 120 TDSESSSKNN SNQNDSSDQQ GLVGEMAGQF DHIPQQQQHK KMATDSPTHS SKTGKALDPK 180 TMRRLAQNRE AARKSRLRKK AYIQQLESSK LKLAQMEQDI HRARSQGLLL GAPGGNTSSA 240 AARFDVDYAR WLEEDGRRMA ELHGGLHAHL PDSDLRAIVD DTLTHYNQLF LLKGMAAKAD 300 VFHLITGMWA TPAERCFLWM GGFRPSELIK TLIPQLDPLT EHQVVGICSL QQSSQQAEEA 360 LSQGLDQLHQ SLAETVAGGS PMDDANVGSF MGHMAIALGQ LSNLEGFVIQ ADNLRQQTIH 420 QMHRILTVRQ AARCFLAIGE YHNRLRALSS FWASRPREIL VADETNCGEL SIAAHPSESQ 480 YSAF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G02850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069411 | 0.0 | AK069411.1 Oryza sativa Japonica Group cDNA clone:J023013G15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662738.2 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like | ||||
Refseq | XP_015698112.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like | ||||
Swissprot | Q53Q70 | 0.0 | TGAL4_ORYSJ; Transcription factor TGAL4 | ||||
TrEMBL | A0A0D9XP55 | 0.0 | A0A0D9XP55_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G02850.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4444 | 36 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-134 | bZIP family protein |
Publications ? help Back to Top | |||
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