PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G02260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GRAS | ||||||||
Protein Properties | Length: 986aa MW: 109674 Da PI: 7.0182 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 243.1 | 1.1e-74 | 20 | 420 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 v lL ecA +v++g++e+a+ + ++++ l ++ p+qRl + ++ La+rl+ s ++l+ al p + e++ ++ aa+ f+++ P+l + LPERR11G02260.1 20 VPLLHECASHVTEGSFEKADFTFKKIRMLTFIADGPLQRLSTIIVDSLAHRLLFSIQGLSGALiDPFDYIEQTIVQ--AARYNFFNLNPFLSTG 111 6789*******************************************************99886666665333333..34445*********** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 ++t N+aI+ea+e e+ W+ +lq + Rp+gpp+l +T++++ ++e l +++ L+k Ae+l+vpf+f v rle+ LPERR11G02260.1 112 FVTINRAIMEAMEDEK--------------WVKILQDFHGRPGGPPELYLTVLHD----DHEFLANMQTLLSKKAESLEVPFRFIS-VKGRLET 186 *************995..............99***********************....9**************************.688**** PP GRAS 189 leleeL....rvkpgEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPk 237 l+l++L ++k g a+a++++lqlh+ll s ++++ ++L++++ l+P+ LPERR11G02260.1 187 LDLSNLrdtfQIKFGGAVAISCALQLHHLLlvddnlsstsiaqlqqmanftqlkqmastvcspastlnylqTPSPHTPKLLARLLSVIRALKPN 280 *****965555666*******************************************************98666777778889*********** PP GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328 ++v++eq+a+hn+ F +rf e l+yy+alfds++a ++++ +er vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ LPERR11G02260.1 281 IMVIMEQDANHNTLLFRDRFNEVLNYYAALFDSFHAVAAANPqrvDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQ 374 **********************************665443333669************************************************ PP GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ls +a + k l ++ + + +e++g+l+l+W + +L+s+SaWr LPERR11G02260.1 375 LSFSAIREGKENLLSFGLKDCQNKEDRGCLLLCWGSTNLYSISAWR 420 *****************777*************************8 PP | |||||||
2 | GRAS | 346.1 | 5.7e-106 | 538 | 973 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPi 90 l++lL++c v++g++ +a+ +L+++ +l+s d+ ++qRlaa+f+ ALa++l++ v++l++al +s++++++ ++aa++ +++ P+ LPERR11G02260.1 538 LISLLYQCSAEVAAGSFDRANLCLEHITQLSSLDApHALQRLAAVFADALARKLLNLVPGLSRALLSSSSATNSadgAHLVTAARRHMFDALPF 631 5799*******************************9*****************************7666665554555566677788******* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 lk+++lt+N+aIlea+ege+ vH++Df+ + +++QW+aL++a+ R+egpp+lRiT+v++ ske l +++ L+k Ae++++ f+fn++ LPERR11G02260.1 632 LKLAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFCGRREGPPHLRITAVHE----SKEFLANMAAVLSKEAEAFDIAFQFNAVE 721 ***************************966899****************************....9**************************83 PP GRAS 183 ak..rledle..leeLrvkpgEalaVnlvlqlhrll.....................................................desvs 219 a+ +++d++ + L v++gEalaV++vlqlhrll + s++ LPERR11G02260.1 722 ASldEMDDFDalRRVLGVRSGEALAVSVVLQLHRLLaaaddnnggarrhaltplqiiarssprsfgellerelntrlqlspdtsphsplATSTT 815 33224444431145679999*****************************************************************988766666 PP GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetl 312 ++ ++L+ v+slsPk++vv+eqea+hn+ F erf eal+yy++lfd+l+ + p+ s er+ vEr+llg+ei+ vva egaerrerhe++ LPERR11G02260.1 816 APK-LGSFLSSVRSLSPKIMVVTEQEASHNGVAFSERFDEALNYYASLFDCLQRS-PALSpAERARVERVLLGEEIRGVVAREGAERRERHERA 907 666.999**********************************************99.666669******************************** PP GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee...sgslvlgWkdrpLvsvSaWr 374 ++W +r+e+aG++ v +s++aa +a ll+ +++ g y+v ++ +g ++++W+++pL++vSaWr LPERR11G02260.1 908 RQWAARMEAAGLERVGISYSAALEAGKLLQSCGWAGpYEVRHDaagHGFFFFCWHKKPLYAVSAWR 973 *********************************8888****8766678888**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 30.511 | 1 | 400 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-72 | 20 | 420 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 49.73 | 512 | 949 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-103 | 538 | 973 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 986 aa Download sequence Send to blast |
MTHGLWAHHQ GSVDHLAQLV PLLHECASHV TEGSFEKADF TFKKIRMLTF IADGPLQRLS 60 TIIVDSLAHR LLFSIQGLSG ALIDPFDYIE QTIVQAARYN FFNLNPFLST GFVTINRAIM 120 EAMEDEKWVK ILQDFHGRPG GPPELYLTVL HDDHEFLANM QTLLSKKAES LEVPFRFISV 180 KGRLETLDLS NLRDTFQIKF GGAVAISCAL QLHHLLLVDD NLSSTSIAQL QQMANFTQLK 240 QMASTVCSPA STLNYLQTPS PHTPKLLARL LSVIRALKPN IMVIMEQDAN HNTLLFRDRF 300 NEVLNYYAAL FDSFHAVAAA NPQRVDERLR VERMILREEI KNILVCEGVH RHERHERLDQ 360 WAMHMEESGF HNVQLSFSAI REGKENLLSF GLKDCQNKED RGCLLLCWGS TNLYSISAWR 420 PNKGSASGSR EHMLVQRQIL WPAQICLAAQ GFVWTRNADF GAISAPFDPA FCSRLGAEEI 480 DPKIQLRLCC TNRSMFQDDM LSSATSSPAS SSVYSPSFSP SNGSWVQELS HDHQSVRLIS 540 LLYQCSAEVA AGSFDRANLC LEHITQLSSL DAPHALQRLA AVFADALARK LLNLVPGLSR 600 ALLSSSSATN SADGAHLVTA ARRHMFDALP FLKLAYLTTN HAILEAMEGE RFVHVVDFSG 660 PAANPVQWIA LFHAFCGRRE GPPHLRITAV HESKEFLANM AAVLSKEAEA FDIAFQFNAV 720 EASLDEMDDF DALRRVLGVR SGEALAVSVV LQLHRLLAAA DDNNGGARRH ALTPLQIIAR 780 SSPRSFGELL ERELNTRLQL SPDTSPHSPL ATSTTAPKLG SFLSSVRSLS PKIMVVTEQE 840 ASHNGVAFSE RFDEALNYYA SLFDCLQRSP ALSPAERARV ERVLLGEEIR GVVAREGAER 900 RERHERARQW AARMEAAGLE RVGISYSAAL EAGKLLQSCG WAGPYEVRHD AAGHGFFFFC 960 WHKKPLYAVS AWRPAATASC CRHTRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-35 | 568 | 973 | 32 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G02260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242794 | 0.0 | AK242794.1 Oryza sativa Japonica Group cDNA, clone: J090058A05, full insert sequence. | |||
GenBank | FQ377947 | 0.0 | FQ377947.1 Oryza glaberrima chromosome 12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616660.1 | 0.0 | scarecrow-like protein 3 isoform X1 | ||||
TrEMBL | A0A0D9XNY4 | 0.0 | A0A0D9XNY4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G02260.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 6e-90 | scarecrow-like 3 |