PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G01300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 323aa MW: 36176.3 Da PI: 6.6406 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 5.8e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL +++++ +++ +i+ev+iyk++PwdLp k+ +ekewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls LPERR11G01300.1 14 LPPGFRFHPTDEELIVHYLMNQTSSIACPV-PIIAEVNIYKCNPWDLPGKALFGEKEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILS 106 79***************************9.88***************8777899**************************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl LPERR11G01300.1 107 SpTSDHIGVKKALVFYKGKPPKGTKTDWIMHEYRL 141 988889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-64 | 9 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.081 | 14 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-26 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MRMPSSSNEA MPALPPGFRF HPTDEELIVH YLMNQTSSIA CPVPIIAEVN IYKCNPWDLP 60 GKALFGEKEW YFFSPRDRKY PNGARPNRAA GSGYWKATGT DKAILSSPTS DHIGVKKALV 120 FYKGKPPKGT KTDWIMHEYR LTGTSTNNNS STKQRRASTM NMRLDDWVLC RIHKKSNDFS 180 DQQEQEPEGS TVDQLEEIHE NNSSETPAPA DMNNEHSAFH PMMMSMSKSC SLTDLLNTID 240 CAALSQFLLD GSSESAEPTA PPCPLIYNDP CQSLNYNLNN NMPHAFDARQ DHHADGHVKN 300 YNGLRRKRMM ACSSGVTSFD DGX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-72 | 9 | 180 | 10 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G01300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615093.1 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | Q8H4S4 | 3e-83 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A0D9XNL2 | 0.0 | A0A0D9XNL2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G01300.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 7e-82 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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