PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G00970.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 328aa    MW: 36735.7 Da    PI: 5.8327
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G00970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.41.2e-17146214358
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS..........STTEEEEEEES--SS CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae..........dpkvveitYegeHnh 58 
                      Dg++WrKYGqK+++++++prsYYrCt++   +C+++k v++ ++           p + +++Y g+H++
  LPERR11G00970.1 146 DGHQWRKYGQKHINNAKHPRSYYRCTYRqeeKCKATKTVQQREDlhyansdngdHPIMYTVVYYGQHTC 214
                      9**************************99999*******987522222221111345778888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-21139214IPR003657WRKY domain
SuperFamilySSF1182906.8E-19140214IPR003657WRKY domain
SMARTSM007748.2E-30144216IPR003657WRKY domain
PfamPF031061.6E-22146214IPR003657WRKY domain
PROSITE profilePS5081114.309146186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MKNKRSLVAD QCCASSVNCC DHRAALSEIA RGQSLVTQLR AIVLPALQSD ERRDIAANML  60
EGILDCSRKA MSQLLLQLSS DSPHDDDDHA DDKRRVRKII SSSDEDDDHC SSKAADEKQN  120
SKPLRQHKRR RFGDSVSLET PVPHYDGHQW RKYGQKHINN AKHPRSYYRC TYRQEEKCKA  180
TKTVQQREDL HYANSDNGDH PIMYTVVYYG QHTCCKGPVS ADDHAVVEAS QIEISTESHY  240
QSPSSSSSDL QQPAHAGDSS QCSNISVTCS SSVAVEDCNK LLDMLPASDE LTTDVLLFDM  300
TAYAPLDMDI NWEMDTNALC GFGKFGEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-131462141068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G00970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981830.0DQ298183.1 Oryza sativa WRKY transcription factor 64 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620021.10.0probable WRKY transcription factor 70
TrEMBLA0A0D9XNF20.0A0A0D9XNF2_9ORYZ; Uncharacterized protein
STRINGLPERR11G00970.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-17WRKY DNA-binding protein 70