PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G00950.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 243aa    MW: 27260.2 Da    PI: 9.0853
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G00950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.61.1e-2261122259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  LPERR11G00950.1  61 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTNDPPMFSVTYFNHHTCN 122
                      8***************************99999*******8761679*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-2449122IPR003657WRKY domain
SuperFamilySSF1182909.42E-2352122IPR003657WRKY domain
PROSITE profilePS5081116.03155124IPR003657WRKY domain
SMARTSM007742.0E-3360123IPR003657WRKY domain
PfamPF031062.5E-2561121IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MALDSVSSYP SDLESSRVTR TPQQRVSKGP RQFVGVVPLI IVISGRKEER TWTTDTYAPY  60
DDGHQWRKYG EKKLSNSNFP RFYYRCTYKN DMKCPATKQV QQKDTNDPPM FSVTYFNHHT  120
CNGSSKIVGT NPDSAAQSSS RKSFSICFNS HGTASERPTF LSSSASLLSP SVQSYSSNQQ  180
LDMNTYIRQF QWANTSSSTS NIPVKMEVDD YAEASASPST TGAPSRTLLP IGQSRCIEYF  240
HFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-1661121968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G00950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8320180.0CT832018.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616442.11e-130probable WRKY transcription factor 70 isoform X1
TrEMBLA0A0D9XNF00.0A0A0D9XNF0_9ORYZ; Uncharacterized protein
STRINGLPERR11G00950.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.18e-20WRKY DNA-binding protein 55