PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G00940.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 350aa    MW: 38406.9 Da    PI: 6.1343
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G00940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.42.2e-21153214259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnhe 59 
                      +Dgy+WrKYG K+++g++f+rsY+rCt++   gC++++++++++++ p ++++tY+++H+++
  LPERR11G00940.1 153 EDGYQWRKYGEKKIQGTHFTRSYFRCTYRddkGCQATRQIQQKDNNyPPMFQVTYNNDHTCN 214
                      8***************************99999*******998766489***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-22143214IPR003657WRKY domain
SuperFamilySSF1182904.05E-20146214IPR003657WRKY domain
PROSITE profilePS5081116.65147216IPR003657WRKY domain
SMARTSM007748.4E-30152215IPR003657WRKY domain
PfamPF031067.4E-23153213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAAGAAVAHS SVCVATAAFV DEHHQAEADD QIASVKKVAE VYELIKTNQP LLLIQHNSQQ  60
LAYSLLTEAM RALNVALSLI KHLPAPAASS AAAAIPVTTS MIKAEATPAN SNDHGADNHV  120
VGKARRSSAA KRKRINGEDK SSCFQLTTAA PHEDGYQWRK YGEKKIQGTH FTRSYFRCTY  180
RDDKGCQATR QIQQKDNNYP PMFQVTYNND HTCNSSCNTS YTNNNNLALP LANNNPNGCH  240
KDGAVCSKMI KQEPQAAPWL PPPPLPIISD NLDETPALHL CQDVPPSSNI LHSNSAAAVC  300
SYTDQFDNHQ MDQQLETTVF EEALGLGADL DDPYFYDPNL LLYENLMNCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-13153214969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G00940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663747.11e-143PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A0D9XNE90.0A0A0D9XNE9_9ORYZ; Uncharacterized protein
STRINGLPERR11G00940.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-17WRKY family protein