 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR11G00440.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
LBD |
| Protein Properties |
Length: 325aa MW: 35464.7 Da PI: 8.4337 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR11G00440.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 137 | 6.8e-43 | 193 | 292 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l+++p+ +r da+sslvyeA+ar+rdPvyG+v+ i+ lqqq+++l+ +l
LPERR11G00440.2 193 PCASCKLLRRRCTAECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLHDVPPPQRADAVSSLVYEANARVRDPVYGCVAAISFLQQQVSHLQMQL 286
7********************************************************************************************* PP
DUF260 95 allkee 100
al+++e
LPERR11G00440.2 287 ALAHAE 292
*99876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MAMAAAGDGD DHLLSLFASS LSHRRHAQPT FFLLLCKPLA FCFLQPLHSS APHRFGDTEL 60
RLLDAALSAG ADVSALLHTR SSARQLLRQS AAQAFSVPAP DLCTRLSIAD FFARAFALTG 120
DVEKDKITDI SRLQNLAKSL SAMCSVQTQS AEYMKRKASG VDEKGNLHSV KSKLPGSSIQ 180
FSREASMAGS GTPCASCKLL RRRCTAECVF APYFPAEEAQ RFAMVHRVFG ASNVSKMLHD 240
VPPPQRADAV SSLVYEANAR VRDPVYGCVA AISFLQQQVS HLQMQLALAH AETSALQLQQ 300
HILVQNAHHQ LMLQEACLKQ ESMWT
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK109211 | 1e-137 | AK109211.1 Oryza sativa Japonica Group cDNA clone:002-156-D02, full insert sequence. |
| GenBank | AK241761 | 1e-137 | AK241761.1 Oryza sativa Japonica Group cDNA, clone: J065205C18, full insert sequence. |
| GenBank | AP014967 | 1e-137 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | AP014968 | 1e-137 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | BX000494 | 1e-137 | BX000494.2 Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | BX000497 | 1e-137 | BX000497.1 Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
