PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G15330.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 898aa    MW: 97746.7 Da    PI: 6.5285
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G15330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-20101156156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  LPERR10G15330.1 101 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 156
                      688999***********************************************998 PP
2START131.69.2e-423195442206
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      la +aa+++ ++  a+ep+W + +  + + ev++ +e ++          ++e  r+ +vv+m++ +lv  +ld++ +W e ++    ka t++
  LPERR10G15330.1 319 LAATAADQVATMCRAGEPLWQLRR--HHSSEVMSVEEHARMfkhnaggvARTEGTRDNAVVIMNSINLVDAFLDTN-KWMELFPsivsKARTIQ 409
                      5789999*****************..888888888877777888888999**************************.***************** PP

                      EECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEE CS
            START  84 vissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvt 165
                       i+ g        g+l lm+ae q+lsplvp R++vf Ry+     +g+w+ivd   +  ++     ++svvR++++pSg++i++++ng+s+v+
  LPERR10G15330.1 410 IINHGaasghlgnGTLLLMQAEVQFLSPLVPaREVVFFRYCIHnADEGSWAIVDFPAEGFEE--GilQASVVRCRRRPSGCMIQDMPNGYSRVV 501
                      *****************************************998999*******55555555..355*************************** PP

                      EEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 166 wvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                      wveh++  g     + ++r  v  g+a+ga +wv+ lqrqce+
  LPERR10G15330.1 502 WVEHMEIVGEEKplQPVFRDYVAGGAAFGATRWVSLLQRQCER 544
                      ******98765449***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-2186152IPR009057Homeodomain-like
SuperFamilySSF466891.21E-1988159IPR009057Homeodomain-like
PROSITE profilePS5007117.02298158IPR001356Homeobox domain
SMARTSM003891.1E-1999162IPR001356Homeobox domain
CDDcd000867.21E-19101159No hitNo description
PfamPF000463.8E-18101156IPR001356Homeobox domain
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084846.117309547IPR002913START domain
SuperFamilySSF559616.59E-29312546No hitNo description
CDDcd088751.43E-99313543No hitNo description
SMARTSM002344.7E-26318544IPR002913START domain
PfamPF018521.7E-34319544IPR002913START domain
SuperFamilySSF559615.77E-16569741No hitNo description
SuperFamilySSF559615.77E-16780818No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MAGASSSAAD ALFIPNPALA GFMPSFHHFS NPTLIPKEEG VMSGLKDEEL EMDMELSGGS  60
GSAHLDGLLS FADVNDIDDH KPQPNNDQHQ NAATTANGGK KKRYHRHTAH QIQQMEALFK  120
ECPHPDDKQR LKLSQELGLK PRQVKFWFQN RRTQMKAQQD RADNVILRAE NENLKSDNFR  180
LQAAIRNVVC PNCGHAAVLG EMSFEEQQLR IENARLKDEL DRLACIATRY GGGGGGRQPV  240
LSTSALSCIS APPPPPVLMP PLDLDMNVYS RHFAEQPPVI GEHLVMPHHH HQHQMVDGYI  300
MDAAPPPVQE QDRQLVLDLA ATAADQVATM CRAGEPLWQL RRHHSSEVMS VEEHARMFKH  360
NAGGVARTEG TRDNAVVIMN SINLVDAFLD TNKWMELFPS IVSKARTIQI INHGAASGHL  420
GNGTLLLMQA EVQFLSPLVP AREVVFFRYC IHNADEGSWA IVDFPAEGFE EGILQASVVR  480
CRRRPSGCMI QDMPNGYSRV VWVEHMEIVG EEKPLQPVFR DYVAGGAAFG ATRWVSLLQR  540
QCERLASELA RNIADLGVIR TPEARTNMMK LSQRMITTFC ANISASGSQS WTALSDSTED  600
TIRVATRKNT EPGQPSGVIL TAVSTSWLPF SHQQVFELLA DEQQRCQLEI LSNGGSLHEV  660
AHIANGSHPR NCISLLRINA ASNSSQNVEL LLQESSIHPD GGSLVVFATV DVDAIQVTMS  720
GEDPSYIPLL PLGFAIFPAT NPSPPAAPTI SSSTTTTGNG ESSTPPPPRN SSNTDEPAIN  780
GCLVTVGMQV LASAVPSAKL NLSSVTAINS HVCNAIHQIT VALKGSGSAA AEPASAGSDH  840
QCKGGFDKKP ALTTQISFSS RQCDVPLKMT KIPPTTRKQW GHFDHFGKLL NATTICCN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G15330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016460.0AB101646.1 Oryza sativa Japonica Group Roc3 mRNA for GL2-type homeodomain protein, complete cds.
GenBankAK0719390.0AK071939.1 Oryza sativa Japonica Group cDNA clone:J013087I01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613461.10.0homeobox-leucine zipper protein ROC3
RefseqXP_025876369.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A0D9XMU90.0A0A0D9XMU9_9ORYZ; Uncharacterized protein
STRINGLPERR10G15330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7