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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR10G14410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 209aa MW: 21873.3 Da PI: 9.3615 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.5e-19 | 147 | 201 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ ++++ LA+ l+L+ rqV vWFqNrRa+ k LPERR10G14410.1 147 RKKLRLSKDQAAVLEETFKEHNTLNPKQKAALARDLKLKPRQVEVWFQNRRARTK 201 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 93.1 | 3.1e-30 | 147 | 206 | 1 | 60 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlE 60 +kk+rlsk+q+++LEe+F+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E LPERR10G14410.1 147 RKKLRLSKDQAAVLEETFKEHNTLNPKQKAALARDLKLKPRQVEVWFQNRRARTKLKQTE 206 69*********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.0E-26 | 11 | 121 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 6.2E-19 | 131 | 197 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.21E-18 | 134 | 204 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.844 | 143 | 203 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-16 | 145 | 207 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.9E-16 | 147 | 201 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.99E-15 | 147 | 204 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 178 | 201 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEMMVHGRRD DQHHLGLGLG LSLSLSLGAA ANDQPAAAAP RHVAAAAHVS PSPFFSDRRS 60 TAACHDEMIA PLPFLRGIDV NRTPAAAATA RGASCSEEEE ETGASSPNST LSSLSGKRGA 120 PAGSSRATAA GAGSDDEDSG GGGGGSRKKL RLSKDQAAVL EETFKEHNTL NPKQKAALAR 180 DLKLKPRQVE VWFQNRRART KLKQTEGAD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 151 | SRKKLRL |
2 | 195 | 203 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}. | |||||
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR10G14410.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662603.1 | 5e-64 | PREDICTED: homeobox-leucine zipper protein HOX1-like | ||||
Swissprot | Q40691 | 1e-58 | HOX1_ORYSI; Homeobox-leucine zipper protein HOX1 | ||||
Swissprot | Q7XC54 | 1e-58 | HOX1_ORYSJ; Homeobox-leucine zipper protein HOX1 | ||||
TrEMBL | A0A0D9XMH1 | 1e-148 | A0A0D9XMH1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR10G14410.1 | 1e-149 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17460.1 | 5e-29 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |