PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G14070.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 381aa    MW: 40698.9 Da    PI: 5.9824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G14070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.3e-16201246555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  LPERR10G14070.1 201 HNESERKRRDRINQKMKTLQKLVPNS-----SKADKASMLDEVINYLKQLQ 246
                      *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.657196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-19199268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.32E-18201250No hitNo description
PfamPF000103.4E-13201246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-18201257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MNQCVPSWDL DDVTPPPPQL TAGGAAGNRA VSSGGGGFVP VSEDQSYYEV AELTWEKGNI  60
SSHGLNRPPP PPPFQSIAVA GDRETLEAVV GAAAEEEGKR MSKRARVACA SQGSVAPGGG  120
GESTLPTLDA GSGDDVFTMT TATNNSTSLE LELDKAGSPE TENTSIAGGA KGWHEENVVI  180
KGEGAMRSSI STKRSRAAAI HNESERKRRD RINQKMKTLQ KLVPNSSKAD KASMLDEVIN  240
YLKQLQAQVQ VMSRMSSMMM PMGMAMPQLQ MSVMAQMAQM AQFGLSMMNM GHQSGYPGLT  300
PPMMHTPPFH LPVSSWDATA AGDRPPLQPI AGAAASDPFS AFLAAQQNAQ QPPNSMEAYN  360
RMMAMYQKLN QQQDQPSNSR Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G14070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879251e-137AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697075.11e-132PREDICTED: transcription factor UNE10-like
TrEMBLA0A0D9XMB30.0A0A0D9XMB3_9ORYZ; Uncharacterized protein
STRINGLPERR10G14070.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-31bHLH family protein