PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G12990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 296aa    MW: 31957.2 Da    PI: 10.2036
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G12990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.81.2e-2939134184
                      EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                      f+kv tpsdv+k++rlv+pk++ae++            g    ++  l++ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L +gD+v F
  LPERR10G12990.1  39 FEKVVTPSDVGKLNRLVIPKQHAERYfpldaaaaaangGVAAGKGLVLSFEDRTGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSF 132
                      99***************************999999996444558889*********************************************** PP

                      EE CS
               B3  83 kl 84 
                       +
  LPERR10G12990.1 133 GR 134
                      84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-3832135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-2836135IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-2637132No hitNo description
SMARTSM010191.1E-2139153IPR003340B3 DNA binding domain
PROSITE profilePS5086313.28139153IPR003340B3 DNA binding domain
PfamPF023621.1E-2639135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDFTPISPAP PLNGGGGRGE EDSDRSAAAW AVVEKEHMFE KVVTPSDVGK LNRLVIPKQH  60
AERYFPLDAA AAAANGGVAA GKGLVLSFED RTGKSWRFRY SYWNSSQSYV MTKGWSRFVK  120
EKRLGAGDTV SFGRGLGDAA ARCRLFIDFR RRRRHDAFVF PPPPTTMAPS SHHHHHHNLQ  180
RQLAPLPSVP LCPWRDYYGG GGTASSGRHV LFLRPQVVTS PAAVLKSVPV HAAVETTAAA  240
RPKRVRLFGV NLDCPAAAMD DGEAEAASLL QQLPSPSSST SSSTAGKKMC SLDLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-56321521113B3 domain-containing transcription factor NGA1
5os9_B1e-56321521113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G12990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0741961e-115AC074196.14 Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence.
GenBankAP0149661e-115AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613852.11e-113putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN81e-114Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLA0A0D9XLX10.0A0A0D9XLX1_9ORYZ; Uncharacterized protein
STRINGLPERR10G12990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-55B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]